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@nel-lab Neural Engineering Laboratory

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    12 repositories

    • mesmerize-core

      Public
      High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
      neurosciencecalcium-imagingcaimancalcium-imaging-analysis
      Python
      •
      Other
      •18•70•17•11•Updated Sep 4, 2025Sep 4, 2025

    • FIOLA

      Public
      Python
      •
      GNU General Public License v2.0
      •4•34•4•4•Updated May 19, 2025May 19, 2025

    • UMouse

      Public
      Repo for analyzing DLC data for clear running wheel
      Python
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated May 11, 2025May 11, 2025

    • smartLLSM

      Public
      Repo for smart microscopy project
      Python
      •
      MIT License
      •2•5•0•0•Updated Oct 18, 2023Oct 18, 2023

    • Behavior3D

      Public
      Python
      •
      GNU General Public License v2.0
      •0•3•0•0•Updated Feb 10, 2023Feb 10, 2023

    • mesmerize-napari

      Public archive
      Mesmerize plugin for the napari viewer
      neuroscienceneuroimagingcalcium-imagingneuroscience-methodsneuroscience-datacalcium-imaging-analysis
      Python
      •
      Apache License 2.0
      •0•6•3•0•Updated Oct 29, 2022Oct 29, 2022

    • Mask_RCNN

      Public
      Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
      Python
      •
      Other
      •12k•0•0•0•Updated Jun 1, 2021Jun 1, 2021

    • volpy

      Public
      Voltage Imaging analysis
      Python
      •0•1•0•0•Updated Sep 22, 2020Sep 22, 2020

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •390•0•0•0•Updated May 27, 2020May 27, 2020

    • OASIS

      Public
      Deconvolution of calcium imaging data
      Python
      •
      GNU General Public License v3.0
      •30•0•0•0•Updated May 21, 2020May 21, 2020

    • detectron2

      Public
      Detectron2 is FAIR's next-generation research platform for object detection and segmentation.
      Python
      •
      Apache License 2.0
      •7.9k•0•0•0•Updated Feb 14, 2020Feb 14, 2020

    • trigger-interface

      Public
      Interface for data acquisition, triggers, and monitoring with in-vivo 2-photon fluorescence microscopy
      Python
      •1•0•0•0•Updated Oct 17, 2019Oct 17, 2019