[Bug]: freeview neurocommand not working.

[Proulx-S]

Version

No response

What platform are you seeing the problem on?

Local PC

What happened

Sorry I can't find the neurocommand version. I installed it maybe 2 weeks ago following option 2 of https://www.neurodesk.org/docs/getting-started/neurocommand/linux-and-hpc/.

Freesurfer commands like mri_convert work fine, but freeview gives the following errors:
sebp@takoyaki:~/neurocommand$ freeview /opt/freesurfer-8.0.0/bin/freeview: /opt/MCR2019b/v97/bin/glnxa64/libQt5X11Extras.so.5: no version information available (required by /opt/freesurfer-8.0.0/bin/freeview) QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-sebp' libGL error: No matching fbConfigs or visuals found libGL error: failed to load driver: swrast /home/sebp/neurocommand/neurodesk/containers/freesurfer_8.0.0_20250210/freeview: line 3: 1399578 Aborted (core dumped) singularity --silent exec --cleanenv --env DISPLAY=$DISPLAY $neurodesk_singularity_opts --pwd "$PWD" /home/sebp/neurocommand/neurodesk/containers/freesurfer_8.0.0_20250210/freesurfer_8.0.0_20250210.simg freeview "$@"

I tried setting the environment variables as described in the doc (https://www.neurodesk.org/tutorials-examples/tutorials/structural_imaging/freesurfer/), to no avail.

Thanks for the awesome tools and for your help!
Sébastien

How to reproduce

No response

Relevant log output or screenshot

No response

[stebo85]

is this on Ubuntu 24.04 with a Wayland desktop?

[Proulx-S]

Ubuntu 24.04. I’m not entirely sure but looking at the about window through noMachine, I see Windowing System: X11 Get Outlook for Android<https://aka.ms/AAb9ysg>

…

________________________________ From: Steffen Bollmann ***@***.***> Sent: Tuesday, March 25, 2025 8:06:03 PM To: NeuroDesk/neurodesk.github.io ***@***.***> Cc: Sebastien Proulx ***@***.***>; Author ***@***.***> Subject: Re: [NeuroDesk/neurodesk.github.io] [Bug]: freeview neurocommand not working. (Discussion #489) is this on Ubuntu 24.04 with a Wayland desktop? — Reply to this email directly, view it on GitHub<#489 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AQKYTAYOTXVMB2NIVWF663T2WIKRXAVCNFSM6AAAAABZY5W4A6VHI2DSMVQWIX3LMV43URDJONRXK43TNFXW4Q3PNVWWK3TUHMYTENRSGI3DQNQ>. You are receiving this because you authored the thread.Message ID: ***@***.***>

[stebo85]

ok, will try to see if we can reproduce this.