Repositories list

• nf-metadata-dictionary

  Public
  Versioned releases of the NF metadata dictionary.

  metadata

  Python

  •

  Creative Commons Zero v1.0 Universal

  •3•5•65•3•Updated Jan 22, 2026Jan 22, 2026

• synapse-miner

  Public
  Python

  •0•1•0•0•Updated Jan 19, 2026Jan 19, 2026

• nf-research-tools-schema

  Public
  Python

  •

  Creative Commons Zero v1.0 Universal

  •1•0•8•4•Updated Jan 14, 2026Jan 14, 2026

• nfportalutils

  Public
  Utilities for NF Portal project and data management

  R

  •

  MIT License

  •3•2•33•2•Updated Jan 12, 2026Jan 12, 2026

• nf-airtable

  Public
  code for syncing airtable to portal tables and other resources

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 12, 2026Jan 12, 2026

• portal_agent_experiments

  Public
  MIT License

  •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

• 2025-sage-hack-ideas

  Public
  tracking space for virtual hackathon ideas

  MIT License

  •0•0•23•0•Updated Dec 11, 2025Dec 11, 2025

• mcp-server

  Public
  An MCP server that gives your AI assistant access to NF-OSI resources and tools

  Python

  •0•0•3•0•Updated Nov 24, 2025Nov 24, 2025

• jobs

  Public
  HTML

  •1•0•10•3•Updated Nov 20, 2025Nov 20, 2025

• rddc_placeholder

  Public
  MIT License

  •0•0•0•0•Updated Nov 7, 2025Nov 7, 2025

• tutorials

  Public
  Materials for various tutorials

  HTML

  •0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

• portal-cleanup-crew

  Public
  Python

  •0•0•1•0•Updated Sep 4, 2025Sep 4, 2025

• data-gatherer

  Public
  Data Gatherer is a retrieval-augmented extraction tool to extract structured dataset references from scientific articles.

  HTML

  •2•1•0•0•Updated Jul 25, 2025Jul 25, 2025

• datahub

  Public
  A centralized location for storing curated data ready for inclusion in cBioPortal.

  HTML

  •137•0•1•0•Updated Jul 14, 2025Jul 14, 2025

• actions

  Public
  Useful actions and functions

  0•0•1•0•Updated Jul 9, 2025Jul 9, 2025

• portal-chatbot

  Public
  Configuration and training for NF Portal Synapse chatbot

  Python

  •

  MIT License

  •2•1•10•0•Updated Jul 1, 2025Jul 1, 2025

• 2025-conf-workshop

  Public
  Supplemental materials for the 2025 conference workshop.

  0•0•0•0•Updated Jun 20, 2025Jun 20, 2025

• biobank-release-2

  Public
  HTML

  •

  Other

  •0•0•4•0•Updated Jun 4, 2025Jun 4, 2025

• deck

  Public
  JavaScript

  •0•0•0•0•Updated Apr 10, 2025Apr 10, 2025

• research

  Public
  Sharing analyses of NF-OSI resources with the community

  R

  •1•0•4•1•Updated Apr 8, 2025Apr 8, 2025

• NF_data_curator

  Public
  Data Ingest Shiny App

  R

  •

  Apache License 2.0

  •20•1•8•0•Updated Mar 19, 2025Mar 19, 2025

• ideas

  Public
  Ideas for the NF-OSI

  MIT License

  •0•0•0•0•Updated Feb 10, 2025Feb 10, 2025

• usagereports

  Public archive
  R

  •

  GNU Affero General Public License v3.0

  •0•1•0•0•Updated Oct 4, 2024Oct 4, 2024

• cnf-cell-lines

  Public
  HTML

  •0•1•0•1•Updated Jul 29, 2024Jul 29, 2024

• nftc-llm

  Public
  Python

  •0•1•0•0•Updated Jul 12, 2024Jul 12, 2024

• nf-data-processing-testing

  Public
  Scripts for nextflow workflow testing

  Shell

  •

  MIT License

  •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

• data_curator_config

  Public
  Project configurations for the Data Curator App

  23•0•0•0•Updated May 31, 2024May 31, 2024

• kairos

  Public
  kairos: NF Analysis Explorer

  R

  •

  Other

  •2•0•14•0•Updated Mar 2, 2023Mar 2, 2023

• NF-virus-detection

  Public
  HTML

  •

  MIT License

  •0•1•0•0•Updated Nov 30, 2022Nov 30, 2022

• vcf2maf

  Public
  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  Perl

  •

  Other

  •221•0•0•0•Updated Aug 26, 2022Aug 26, 2022