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@nimh-dsst National Institute of Mental Health Data Science & Sharing Team

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    61 repositories

    • dsst-rtd

      Public
      DSST's readthedocs site repo.
      1•0•0•1•Updated Feb 20, 2026Feb 20, 2026

    • napari-swc-viewer

      Public
      A Napari plugin that allows viewing of SWC files in napari
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•2•0•Updated Feb 19, 2026Feb 19, 2026

    • sqlite-browser

      Public
      A Python/web-based database browser for querying and visualizing SQLite databases. Built with Plotly Dash, it provides an intuitive interface for loading databa…
      databasesqlitequery-builderdata-analysis
      Python
      •0•0•2•0•Updated Feb 19, 2026Feb 19, 2026

    • osm-dashboard

      Public
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

    • fmriprep-qc-svg-to-gif

      Public
      Python
      •0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • osm

      Public
      OpenSciMetrics (OSM) applies NLP and LLM-based metrics and indicators related to transparency, data sharing, rigor, and open science on biomedical publications.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •4•1•14•4•Updated Jan 23, 2026Jan 23, 2026

    • open-science-metrics

      Public
      0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • fast-fmm-rpy2

      Public
      Python wrapper for the R fastFMM package
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • minerU_osm

      Public
      MinerU PDF-to-JSON conversion pipeline for NIH Biowulf HPC
      Python
      •0•0•0•0•Updated Jan 11, 2026Jan 11, 2026

    • catnip_on_dandi

      Public
      The Jupyter Notebook to demo the CATNIP analysis derivatives uploaded to DANDI archive
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 29, 2025Dec 29, 2025

    • dsst-etl

      Public
      importing leo's code to get around LFS restriction on forks
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•0•4•1•Updated Dec 22, 2025Dec 22, 2025

    • osm-2025-12-poster-incf

      Public
      Code and details for Open Science Metrics poster presented at EBRAINS / INCF December 11, 2025
      Python
      •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

    • rtransparent

      Public
      The rtransparent R package.
      R
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Nov 21, 2025Nov 21, 2025

    • nda-bids-upload

      Public
      For uploading BIDS data to the NDA.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•2•3•Updated Sep 25, 2025Sep 25, 2025

    • paper-abmt2

      Public
      Shell
      •0•0•0•0•Updated Sep 15, 2025Sep 15, 2025

    • pmcoa

      Public
      Code for working with PMC OA data
      Shell
      •0•0•2•0•Updated Aug 15, 2025Aug 15, 2025

    • lunch-and-learn

      Public
      Code that is shared during lunch and learn sessions
      Jupyter Notebook
      •1•0•4•1•Updated Aug 12, 2025Aug 12, 2025

    • bids-guidelines

      Public
      A work-in-progress BIDS App for judging datasets against established guidelines.
      Python
      •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • neural-analysis

      Public
      This code is part of a data analysis and modeling pipeline for neuroscience or behavioral data. It includes functions for data preprocessing, visualization, and…
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • ome_compare

      Public
      Code to compare performance of OME-TIFF vs OME-ZARR
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Jun 23, 2025Jun 23, 2025

    • dsst-defacing-pipeline

      Public
      Defacing algorithm to improve and evaluate accuracy for large datasets.
      Python
      •2•3•16•2•Updated Jun 17, 2025Jun 17, 2025

    • olmocr_testing

      Public
      Code used to test the inference performance of AI2's olmOCR model preview
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 23, 2025May 23, 2025

    • abcd-fasttrack2bids

      Public
      Python
      •2•0•16•0•Updated Apr 21, 2025Apr 21, 2025

    • DTI-Phenotyping

      Public
      Scripts used to curate and analyze the DTI-Phenotyping dataset.
      R
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • tdt_reader

      Public
      Modified version of the tdt TDTbin2py module
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Apr 9, 2025Apr 9, 2025

    • DSST-ZarrNii

      Public
      Code for interconversion between Zarr and Nii
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Mar 7, 2025Mar 7, 2025

    • cmn-website

      Public
      HTML
      •3•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • Pub-Data-Parser

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Feb 21, 2025Feb 21, 2025

    • utils

      Public
      A repository containing code that is meant to demonstrate common DSST tasks
      Python
      •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • photometry_analysis

      Public
      Streamlined analysis of fiber photometry code in a python package
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Feb 14, 2025Feb 14, 2025