Repositories list

• nextflow_nfcore_intro

  Public
  Materials for Getting Started with nf-core Nextflow Pipelines workshop, part of the fall 2024 Foundations in Genomic Analyses series. Taught by Haley Carter.

  0•0•0•0•Updated Nov 13, 2025Nov 13, 2025

• artificial_intelligence_for_research

  Public
  1•5•0•0•Updated Nov 11, 2025Nov 11, 2025

• quest_ood_jupyter_spark

  Public
  Quest OnDemand App for running Spark/pySpark and Jupyter.

  HTML

  •

  MIT License

  •0•0•0•1•Updated Nov 10, 2025Nov 10, 2025

• quest_ood_webui

  Public
  Quest OnDemand app to run Open WebUI

  HTML

  •1•0•0•0•Updated Nov 10, 2025Nov 10, 2025

• customizing_spacy_ner

  Public
  Jupyter Notebook

  •3•0•0•0•Updated Nov 10, 2025Nov 10, 2025

• Julia_workshop

  Public
  Materials for Julia language workshop

  Jupyter Notebook

  •7•4•0•0•Updated Nov 7, 2025Nov 7, 2025

• Genomics_Compute_Cluster_Workshops

  Public
  Catalog of workshops developed to support research with Northwestern's Genomics Compute Cluster.

  0•0•0•0•Updated Nov 4, 2025Nov 4, 2025

• quest_ood_ansys

  Public
  Quest Open OnDemand Ansys App

  HTML

  •

  MIT License

  •0•1•0•0•Updated Oct 30, 2025Oct 30, 2025

• examplejobs

  Public
  Example job submission and application scripts for Northwestern's Quest computing cluster

  pythonbashr+ 5hpcmatlabstataquestmoab

  Shell

  •20•43•0•1•Updated Oct 29, 2025Oct 29, 2025

• rna_alignment

  Public
  Materials for workshop on using the STAR alignment tool

  Shell

  •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

• stats_mixed_models

  Public
  Repo for Introduction to Mixed Models for Correlated Data

  R

  •0•0•0•0•Updated Oct 28, 2025Oct 28, 2025

• stats

  Public
  0•3•0•0•Updated Oct 28, 2025Oct 28, 2025

• rdm-workshops

  Public
  Workshop materials for Research Data Management workshops by Research Computing and Data Services

  Jupyter Notebook

  •0•5•0•0•Updated Oct 27, 2025Oct 27, 2025

• sequence_alignment

  Public
  Workshop materials for Sequence Alignment

  0•0•0•0•Updated Oct 22, 2025Oct 22, 2025

• genomic_filetypes

  Public
  1•1•0•0•Updated Oct 16, 2025Oct 16, 2025

• quest_ood_gui_apps

  Public
  Creating a single GUI app and using Open OnDemand subapps for each individual one for better management

  HTML

  •

  MIT License

  •0•0•0•0•Updated Oct 16, 2025Oct 16, 2025

• NextStepsInPython

  Public
  Self-guided notebooks for advanced beginner and intermediate Python coders

  Jupyter Notebook

  •5•18•0•0•Updated Oct 14, 2025Oct 14, 2025

• quest_ood_platforma

  Public
  Platforma App

  HTML

  •0•0•0•0•Updated Oct 13, 2025Oct 13, 2025

• jobstats

  Public
  Jobstats is a job monitoring platform for CPU and GPU clusters

  Python

  •

  GNU General Public License v2.0

  •25•0•0•0•Updated Oct 9, 2025Oct 9, 2025

• quest_ood_dockerfiles

  Public
  This repository holds all of the Dockerfile that are used to support each interactive application on Quest OnDemand

  Dockerfile

  •1•1•0•0•Updated Oct 7, 2025Oct 7, 2025

• quest_ood_smrtlink

  Public
  Quest OnDemand app to run SMRTLink

  HTML

  •0•0•0•0•Updated Oct 7, 2025Oct 7, 2025

• quest_ood_jupyter

  Public
  Quest OpenOnDemand Jupyter App

  HTML

  •0•0•0•1•Updated Oct 1, 2025Oct 1, 2025

• quest_ood_chimerax

  Public
  ChimeraX install for Quest OnDemand application

  HTML

  •

  MIT License

  •0•0•0•0•Updated Oct 1, 2025Oct 1, 2025

• quest_ood_cryosparc

  Public
  Quest OpenOnDemand Cryosparc App

  HTML

  •

  MIT License

  •0•0•0•0•Updated Oct 1, 2025Oct 1, 2025

• Next-steps-in-R

  Public
  4•6•0•0•Updated Sep 30, 2025Sep 30, 2025

• git-RStudio

  Public
  Content from a workshop on using git from the RStudio interface.

  0•1•0•0•Updated Sep 29, 2025Sep 29, 2025

• quest_ood_rstudio_server

  Public
  Quest OpenOnDemand app to run RStudio Server

  HTML

  •

  MIT License

  •0•1•0•0•Updated Sep 29, 2025Sep 29, 2025

• quest_ood_comsol

  Public
  Quest Open OnDemand COMSOL App

  HTML

  •

  MIT License

  •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

• quest_ood_qgis

  Public
  This repository holds the Quest OnDemand QGIS Interactive Application

  HTML

  •

  MIT License

  •0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

• quest_software_dockerfiles

  Public
  A repository for all Dockerfiles or Singularity Definition files used for the purpose of installing a given software on Quest

  Dockerfile

  •4•1•0•0•Updated Sep 17, 2025Sep 17, 2025