Open Problems in Single-Cell Analysis

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30 packages

utils/extract_uns_metadata
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/utils/extract_uns_metadata

19.9k
validation/check_dataset_with_schema
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/validation/check_dataset_with_schema

1.22k
common/extract_metadata
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/extract_metadata

611
datasets/normalization/log_cp
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/log_cp

167
project/sync_resources
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/project/sync_resources

106
datasets/processors/pca
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/pca

73
datasets/processors/hvg
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/hvg

73
datasets/processors/knn
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/knn

73
datasets/loaders/tenx_visium
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/tenx_visium

62
common/check_dataset_schema
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/check_dataset_schema

58
datasets/processors/subsample
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/subsample

55
datasets/normalization/prot_clr
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/prot_clr

54
datasets/normalization/atac_tfidf
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/atac_tfidf

54
datasets/normalization/sqrt_cp
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/sqrt_cp

54
datasets/processors/svd
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/processors/svd

54
datasets/normalization/l1_sqrt
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/l1_sqrt

54
datasets/normalization/log_scran_pooling
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/normalization/log_scran_pooling

54
datasets/loaders/zenodo_spatial
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/zenodo_spatial

50
project/create_component
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/project/create_component

45
reporting/get_metric_info
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/reporting/get_metric_info

44
reporting/get_dataset_info
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/reporting/get_dataset_info

44
reporting/get_method_info
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/reporting/get_method_info

44
reporting/get_results
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/reporting/get_results

44
reporting/generate_qc
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/reporting/generate_qc

43
reporting/get_task_info
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/reporting/get_task_info

43
project/render_readme
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/project/render_readme

43
project/fetch_run_work_dir
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/project/fetch_run_work_dir

41
project/upgrade_config
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/project/upgrade_config

39
validation/check_yaml_with_schema
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/validation/check_yaml_with_schema

39
utils/decompress_gzip
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/utils/decompress_gzip

39