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    109 repositories

    • Worm3DViewer

      Public
      Test repository for multiple views of the worm in 3D
      Python
      •0•0•0•0•Updated Nov 28, 2025Nov 28, 2025

    • OpenWorm

      Public
      Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
      simulationbiologyopenwormelegans
      Python
      •
      MIT License
      •221•2.9k•41•2•Updated Nov 28, 2025Nov 28, 2025

    • openworm.ai

      Public
      Scripts related to use of LLMs and other AI technology in OpenWorm
      HTML
      •
      MIT License
      •2•2•1•1•Updated Nov 27, 2025Nov 27, 2025

    • c302

      Public
      The c302 framework for generating multiscale network models of C. elegans
      simulationopenworm
      Python
      •
      MIT License
      •28•133•8•1•Updated Nov 26, 2025Nov 26, 2025

    • CE_locomotion

      Public
      Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer
      C++
      •5•2•7•2•Updated Nov 22, 2025Nov 22, 2025

    • WCONViewer

      Public
      Python based viewer for WCON files in 2D
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 20, 2025Nov 20, 2025

    • ConnectomeToolbox

      Public
      Information on published connectomics data related to C. elegans
      Python
      •
      MIT License
      •6•3•2•0•Updated Nov 20, 2025Nov 20, 2025

    • NicolettiEtAl2024_MN_IN

      Public
      C.elegans motor and interneurons (Nicoletti at al. 2024)
      Python
      •4•0•4•2•Updated Nov 4, 2025Nov 4, 2025

    • hodgkin_huxley_tutorial

      Public
      A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
      Python
      •
      GNU Lesser General Public License v3.0
      •10•48•6•0•Updated Oct 30, 2025Oct 30, 2025

    • wormneuroatlas

      Public
      Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/
      Python
      •
      GNU General Public License v3.0
      •8•2•0•0•Updated Oct 22, 2025Oct 22, 2025

    • sibernetic

      Public
      This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
      C
      •
      Other
      •110•382•27•12•Updated Oct 10, 2025Oct 10, 2025

    • WormWorx

      Public
      C. elegans simulator
      C
      •3•7•1•0•Updated Sep 5, 2025Sep 5, 2025

    • CelegansNeuromechanicalGaitModulation

      Public
      C elegans Neuromechanical Gait Modulation Model
      C
      •7•1•0•0•Updated Aug 1, 2025Aug 1, 2025

    • Blender2NeuroML

      Public
      Conversion script to bring neuron models created in Blender into NeuroML format
      Python
      •
      MIT License
      •5•17•2•0•Updated Jul 25, 2025Jul 25, 2025

    • Worm2D

      Public
      Simulator of 2D worm body models
      C++
      •
      MIT License
      •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • openwormbrowser-ios

      Public
      OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser
      Objective-C
      •
      Other
      •15•21•3•1•Updated Jul 2, 2025Jul 2, 2025

    • tierpsy-tracker

      Public
      Multi-Worm Behaviour Tracker. README here:
      Python
      •
      MIT License
      •38•2•0•0•Updated Jun 29, 2025Jun 29, 2025

    • openworm.github.io

      Public
      OpenWorm main website
      HTML
      •35•29•14•0•Updated Jun 29, 2025Jun 29, 2025

    • .github

      Public
      The OpenWorm organisation template repository.
      Python
      •0•3•1•0•Updated Jun 19, 2025Jun 19, 2025

    • muscle_model

      Public
      Model of C elegans body wall muscle based on Boyle & Cohen 2008
      Jupyter Notebook
      •
      Other
      •21•48•17•1•Updated May 15, 2025May 15, 2025

    • JohnsonMailler_MuscleModel

      Public
      C. elegans muscle model from Johnson & Mailler 2015
      HTML
      •1•2•3•0•Updated May 15, 2025May 15, 2025

    • NeuroPAL

      Public
      Scripts to analyse and convert NeuroPAL datasets
      neurosciencecelegansopenworm3dneuroml
      Jupyter Notebook
      •0•5•0•0•Updated Apr 29, 2025Apr 29, 2025

    • NicolettiEtAl2019_NeuronModels

      Public
      Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)
      Jupyter Notebook
      •2•1•2•0•Updated Apr 28, 2025Apr 28, 2025

    • tracker-commons

      Public
      Compilation of information and code bases related to open-source trackers for C. elegans
      Scala
      •13•13•28•4•Updated Apr 23, 2025Apr 23, 2025

    • geppetto-client

      Public
      The web client of a Geppetto application
      JavaScript
      •
      Other
      •2•5•70•27•Updated Apr 18, 2025Apr 18, 2025

    • org.geppetto.frontend

      Public
      Geppetto Java frontend bundle
      Java
      •
      Other
      •24•28•2•4•Updated Apr 3, 2025Apr 3, 2025

    • org.geppetto.datasources

      Public
      Java
      •
      Other
      •2•2•0•5•Updated Mar 28, 2025Mar 28, 2025

    • org.geppetto.core

      Public
      Geppetto core bundle
      Java
      •
      Other
      •10•22•6•7•Updated Mar 28, 2025Mar 28, 2025

    • owmeta-core

      Public
      Core library for owmeta
      Python
      •
      MIT License
      •2•3•41•0•Updated Mar 18, 2025Mar 18, 2025

    • simulate

      Public
      Links to online simulations of the worm
      HTML
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025