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@proteomicsunitcrg CRG/UPF Protemics Unit

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    18 repositories

    • qsample-client

      Public
      The presentation layer of the QSample project, built with AngularJS. Designed to function as a submodule within the QSample Server repository, it does not requi…
      nodejsangularjsfront-end
      nodejsangularjsfront-endquality-controlmass-spectrometry
      TypeScript
      •
      MIT License
      •0•1•0•0•Updated Jun 3, 2026Jun 3, 2026

    • atlas-config

      Public
      HCL
      •0•0•0•0•Updated Jun 2, 2026Jun 2, 2026

    • qcloud2-client

      Public
      Qcloud2 client
      TypeScript
      •0•0•1•1•Updated May 22, 2026May 22, 2026

    • atlas

      Public
      Single-file quality control prototyping pipeline for diverse mass spectrometry workflows.
      quality-controlmass-spectrometrycomputational-proteomics
      quality-controlmass-spectrometrycomputational-proteomicsnextflow-pipeline
      Nextflow
      •
      Other
      •1•2•5•0•Updated May 13, 2026May 13, 2026

    • ribomsqc

      Public
      QC pipeline that monitors mass spectrometer performance in ribonucleoside analysis
      R
      •
      MIT License
      •3•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • test-datasets

      Public
      Test data to be used for automated testing with the nf-core pipelines
      MIT License
      •513•0•0•0•Updated Oct 29, 2025Oct 29, 2025

    • qcloud2-pipeline

      Public
      QCloud2 pipeline
      Nextflow
      •2•7•2•0•Updated Feb 20, 2025Feb 20, 2025

    • MSCI

      Public
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • FragPipe

      Public
      A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
      Java
      •
      Other
      •46•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • modules

      Public
      Repository to host tool-specific module files for the Nextflow DSL2 community!
      Nextflow
      •
      MIT License
      •1.1k•0•0•0•Updated May 14, 2024May 14, 2024

    • cv

      Public
      Mass spectrometry controlled vocabulary
      0•0•1•0•Updated Oct 16, 2023Oct 16, 2023

    • peptide-stability

      Public
      CSS
      •1•2•2•0•Updated Jul 10, 2023Jul 10, 2023

    • rawocop

      Public
      Smart, light, easy and robust Thermo RAW files backup program
      backupproteomicsmass-spectrometry
      backupproteomicsmass-spectrometryrawraw-databackup-toolproteomics-datathermofisher
      Visual Basic .NET
      •0•2•0•0•Updated Jan 26, 2023Jan 26, 2023

    • px-submission-tool

      Public
      ProteomeXchange data submission tool
      Java
      •6•0•1•0•Updated Jan 5, 2023Jan 5, 2023

    • nf-tower

      Public
      Nextflow Tower system
      Groovy
      •
      Mozilla Public License 2.0
      •57•0•1•0•Updated Sep 8, 2022Sep 8, 2022

    • OpenMS

      Public
      The codebase of the OpenMS project
      C++
      •
      Other
      •428•0•0•0•Updated Dec 2, 2021Dec 2, 2021

    • QCloud

      Public
      A cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, automated data processing and a…
      quality-controlproteomicsmass-spectrometry
      quality-controlproteomicsmass-spectrometryopenmsqcloud
      Java
      •0•2•0•0•Updated Oct 14, 2021Oct 14, 2021

    • elixir_proteomics_QC

      Public
      Nextflow
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jul 4, 2019Jul 4, 2019
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