Repositories list

• scifio-imageio

  Public
  SCIFIO ImageIO plugin for ITK

  C++

  •14•16•9•0•Updated Apr 3, 2026Apr 3, 2026

• scifio

  Public
  SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk!…

  Java

  •

  BSD 2-Clause "Simplified" License

  •40•97•232•3•Updated Mar 23, 2026Mar 23, 2026

• scifio-labeling

  Public
  I/O for ImgLib2 ImgLabelings

  Java

  •

  BSD 2-Clause "Simplified" License

  •1•2•3•0•Updated Sep 8, 2025Sep 8, 2025

• scifio.github.io

  Public
  SCIFIO web site

  HTML

  •3•1•0•0•Updated Mar 25, 2025Mar 25, 2025

• scifio-tutorials

  Public
  Tutorials for use of SCIFIO and its plugins.

  Java

  •

  Creative Commons Zero v1.0 Universal

  •4•3•4•1•Updated Jun 1, 2023Jun 1, 2023

• scifio-bf-compat

  Public
  SCIFIO (@scifio/scifio) plug-in allowing use of Bio-Formats readers.

  Java

  •

  BSD 2-Clause "Simplified" License

  •5•3•7•0•Updated Sep 22, 2022Sep 22, 2022

• .github

  Public
  SCIFIO organization profile

  The Unlicense

  •0•0•0•0•Updated Sep 7, 2022Sep 7, 2022

• scifio-ome-xml

  Public
  SCIFIO plug-in providing support for the OME data model, including readers, writers and translators for OME-XML and OME-TIFF formats.

  Java

  •

  BSD 2-Clause "Simplified" License

  •3•2•10•1•Updated Aug 17, 2022Aug 17, 2022

• scifio-lifesci

  Public
  SCIFIO plug-in providing support for proprietary life science formats (e.g. those supported by Bio-Formats).

  Java

  •

  GNU General Public License v2.0

  •4•1•3•1•Updated Jun 14, 2022Jun 14, 2022

• scifio-javacv

  Public
  JavaCV bindings for SCIFIO so it can read all those movies

  Java

  •4•2•2•0•Updated Jun 14, 2022Jun 14, 2022

• scifio-jai-imageio

  Public
  SCIFIO fork of the Java Advanced Imaging Image I/O Tools API Core

  Java

  •

  Other

  •2•2•1•0•Updated Jun 14, 2022Jun 14, 2022

• scifio-itk-bridge

  Public
  Java code which pipes information between SCIFIO and ITK.

  Java

  •

  Other

  •3•2•5•0•Updated Jun 14, 2022Jun 14, 2022

• scifio-hdf5

  Public
  SCIFIO format plugins for reading and writing HDF5 data.

  Java

  •

  BSD 2-Clause "Simplified" License

  •4•0•1•0•Updated Jun 14, 2022Jun 14, 2022

• scifio-cli

  Public
  SCIFIO command line tools

  Java

  •

  BSD 2-Clause "Simplified" License

  •3•3•1•0•Updated Jun 14, 2022Jun 14, 2022

• dotfiles

  Public
  Configuration files for SCIFIO resources

  2•0•0•0•Updated Apr 20, 2022Apr 20, 2022

• scifio-testing

  Public
  Extensible test suite for SCIFIO and SCIFIO-based software.

  Other

  •2•0•0•0•Updated Nov 8, 2021Nov 8, 2021

• scifio-benchmark

  Public
  Java

  •

  Other

  •3•1•0•0•Updated Nov 8, 2021Nov 8, 2021

• example-scifio-format

  Public
  A simple Maven project implementing a SCIFIO format

  Java

  •

  Creative Commons Zero v1.0 Universal

  •2•1•0•0•Updated Mar 10, 2017Mar 10, 2017

• pom-scifio

  Public archive
  OBSOLETE - Use https://github.com/scijava/pom-scijava instead!

  Other

  •2•0•0•0•Updated Jan 30, 2017Jan 30, 2017

• bioformats

  Public
  A fork of the @openmicroscopy/bioformats develop branch, refactored to use @scifio/scifio for image I/O. *EXPERIMENTAL* This project is developed to maintain ba…

  Java

  •

  GNU General Public License v2.0

  •253•1•0•0•Updated Nov 5, 2013Nov 5, 2013