Repositories list

• transmart-base-ui

  Public
  Boilerplate code for tranSMART UI

  JavaScript

  •3•0•0•0•Updated Jul 15, 2020Jul 15, 2020

• SmartR

  Public
  SmartR

  JavaScript

  •

  Apache License 2.0

  •13•13•0•0•Updated Dec 12, 2019Dec 12, 2019

• transmartApp

  Public
  tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and…

  JavaScript

  •

  GNU General Public License v3.0

  •74•71•1•0•Updated Jul 20, 2018Jul 20, 2018

• transmart-data

  Public
  Tools for managing tranSMART's database

  PLSQL

  •

  GNU General Public License v3.0

  •46•3•0•1•Updated Jun 7, 2018Jun 7, 2018

• transmart-test

  Public
  Functional tests for tranSMART

  Groovy

  •4•1•0•0•Updated May 2, 2018May 2, 2018

• transmart-core-db

  Public
  TranSMART Core

  Groovy

  •

  GNU General Public License v3.0

  •30•1•0•2•Updated Mar 12, 2018Mar 12, 2018

• blend4j-plugin

  Public
  blend4j-plugin is a grails plugin to access galaxy.

  Groovy

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• Rmodules

  Public
  A R statistical analysis module plugin for tranSMART

  Groovy

  •

  Other

  •34•5•0•0•Updated Mar 12, 2018Mar 12, 2018

• transmart-xnat-viewer

  Public
  Connector to link tranSMART to an XNAT server

  Groovy

  •6•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• transmart-xnat-importer-plugin

  Public
  Groovy

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• transmart-rest-api

  Public
  HTTP available tranSMART RESTful API

  Groovy

  •

  Other

  •11•3•0•1•Updated Mar 12, 2018Mar 12, 2018

• dalliance-plugin

  Public
  JavaScript

  •4•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• transmart-mydas

  Public
  Java

  •5•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• transmart-metacore-plugin

  Public
  The tranSMART plugin Metacore

  Groovy

  •6•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• transmart-gwas-plink

  Public
  Plink integration for tranSMART

  Groovy

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• transmart-legacy-db

  Public
  Contains the Grails domain declarations of the legacy transmart schema

  Groovy

  •

  GNU General Public License v2.0

  •6•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• transmart-extensions

  Public
  Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!

  Java

  •10•1•0•0•Updated Mar 12, 2018Mar 12, 2018

• folder-management-plugin

  Public
  The transmart (and grails) plugin that contains the folder-management elements.

  Groovy

  •17•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• tranSMART-ETL

  Public
  tranSMART ETL pipelines and configurations

  Groovy

  •26•11•0•0•Updated Mar 12, 2018Mar 12, 2018

• Scripts

  Public
  A collection of scripts for managing all the tranSMART Foundation repositories

  Shell

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Feb 19, 2018Feb 19, 2018

• transmart-gwas-plugin

  Public
  The transmart (and grails) plugin that contains the GWAS elements.

  PLSQL

  •14•0•0•0•Updated Jan 17, 2018Jan 17, 2018

• transmart-core-api

  Public
  constraints

  Groovy

  •

  GNU General Public License v3.0

  •15•1•0•0•Updated Jan 17, 2018Jan 17, 2018

• RInterface

  Public
  A R module with packaged functions to query the tranSMART database directly

  R

  •

  Other

  •9•4•1•1•Updated Oct 12, 2017Oct 12, 2017

• IpaApi

  Public
  Java

  •

  Apache License 2.0

  •2•0•0•0•Updated Dec 7, 2016Dec 7, 2016

• GWAVA

  Public
  Genome Wide Association Study Visualizer (from Pfizer)

  HTML

  •2•0•0•0•Updated Oct 18, 2016Oct 18, 2016

• mydas

  Public
  mydas is an easy-to-extend Java DAS server framework.

  Java

  •2•0•0•0•Updated Oct 17, 2016Oct 17, 2016

• transmart-ICE

  Public
  ICE tool for transmart ETL (formerly FCL4tranSMART)

  Java

  •1•1•0•0•Updated Jul 19, 2016Jul 19, 2016

• transmart-batch

  Public
  tranSMART pipeline alternative to ETL, using Spring Batch

  Groovy

  •14•0•0•0•Updated Jul 19, 2016Jul 19, 2016

• transmart-horde

  Public
  This contains code for a prototype of "federation"

  Groovy

  •0•0•0•0•Updated Jun 27, 2016Jun 27, 2016

• transmartApp-Config

  Public
  external configuration files for tranSMART application

  Groovy

  •3•4•1•0•Updated May 26, 2016May 26, 2016