Center for Computational Genomics and Data Science (CGDS)

All

19 repositories

Public-CGDS-Repo-Discovery
Public
An organized listing of public repositories within CGDS to help with discovery of works completed by CGDS.
devops
devops
0•0•0•0•Updated Mar 17, 2026Mar 17, 2026
quac
Public
🦆 Quality Control of WGS and exome samples 🦆
pipeline
pipeline
Python
•
GNU General Public License v3.0
•1•7•14•2•Updated Mar 16, 2026Mar 16, 2026
rosalution
Public
Rosalution assists researchers study genetic variation 🧬 in patients 🧑🏾‍🤝‍🧑🏼 by helping select candidate animal models 🐀🐁🐠🪱 to replicate the variation to furthe…
software
software
JavaScript
•
GNU General Public License v3.0
•1•9•2•3•Updated Mar 16, 2026Mar 16, 2026
mecfs-cohort-analysis
Public
Transcriptomics and phenotypic analysis of a cohort of ME/CFS patients.
cohort-analysis workflowr rnaseq-analysis
cohort-analysis workflowr rnaseq-analysis mecfs phenotype-analysis
Jupyter Notebook
•
GNU General Public License v3.0
•0•2•0•0•Updated Feb 17, 2026Feb 17, 2026
learnings_journal
Public
Tips and tricks we learn at CGDS to get stuff working
support
support
Python
•0•4•1•1•Updated Feb 11, 2026Feb 11, 2026
DITTO
Public
Variant Deleteriousness prediction tool using AI
ditto sciops
ditto sciops
Jupyter Notebook
•
GNU General Public License v3.0
•0•1•0•0•Updated Jan 29, 2026Jan 29, 2026
somatic-mutation-signal-identification
Public
Mutational signal profiling from somatic variation to detect disrupted mechanisms in somatic cells (typically cancers) using https://github.com/AlexandrovLab/Si…
somatic-mutations sciops genomics-analysis
somatic-mutations sciops genomics-analysis
Python
•0•0•1•0•Updated Jan 26, 2026Jan 26, 2026
transcriptome-wide
Public archive
R
•1•0•0•0•Updated Oct 18, 2025Oct 18, 2025
multiple-chorangiomas-subclone-analysis
Public
Process and setup for determining clonal populations from WGS data of multiple chorangiomas tissue
genomics pvp subclonal-deconvolution
genomics pvp subclonal-deconvolution
Python
•0•1•0•0•Updated Jun 4, 2025Jun 4, 2025
DITTO-API
Public
This is the API for serving up DITTO scores and hosting on Cloud.rc at UAB.
ditto sciops
ditto sciops
Python
•
GNU General Public License v3.0
•0•1•0•0•Updated May 19, 2025May 19, 2025
muscular_dystrophy_rnaseq_vma21_manuscript
Public
Muscular Dystrophy (XMEA) Bulk RNA-Seq Analysis (DGE and Sashimi-Splicing)
Shell
•
GNU General Public License v3.0
•1•1•0•1•Updated May 16, 2025May 16, 2025
cgds_repo_template
Public template
Template repo for CGDS repos. Visit the webpage below for usage instructions.
support
support
Other
•1•3•4•0•Updated Dec 24, 2024Dec 24, 2024
DMEA
Public
Drug Mechanism Enrichment Analysis
R
•1•0•0•0•Updated Nov 12, 2024Nov 12, 2024
DITTO-UI
Public
Easy to use web interface for biologists to look for genetic variants and understand their deleteriousness using DITTO scores.
bioinformatics genomics clinvar
bioinformatics genomics clinvar precision-medicine ditto pathogenic-variants sciops rare-disease streamlit-webapp
Python
•
GNU General Public License v3.0
•0•2•3•0•Updated Oct 28, 2024Oct 28, 2024
eslint-config-cgds
Public
CGDS' ESLint's linting & formatting shareable config for JavsScript projects
GNU General Public License v3.0
•0•0•0•0•Updated Oct 4, 2024Oct 4, 2024
.github
Public
The Center for Computational Genomics and Data Science (CGDS) seeks to develop and apply tools and methods to uncover new and novel information that provide ben…
devops
devops
0•0•0•0•Updated Jul 2, 2024Jul 2, 2024
cgds-domain-home-page
Public
The base HTML page and to be packaged and deployed to cgds.uab.edu
devops
devops
CSS
•0•0•0•0•Updated Apr 12, 2024Apr 12, 2024
shareops-self-hosted-runners-demo
Public
Weeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee
GNU Lesser General Public License v2.1
•0•0•0•0•Updated Aug 8, 2023Aug 8, 2023
mixoviz
Public
Detection and visualization of 2n/3n mixoploidy from a VCF
Python
•
Other
•2•0•0•0•Updated May 20, 2021May 20, 2021