Repositories list

• fdp

  Public
  Repository with the content of the WikiPathways FAIR Data Point.

  fdpfair-data-pointwikipathway

  HTML

  •

  MIT License

  •0•0•4•0•Updated Mar 3, 2026Mar 3, 2026

• wikipathways.github.io

  Public
  GitHub pages for GPML-Repo

  HTML

  •23•9•16•0•Updated Mar 3, 2026Mar 3, 2026

• wikipathways-database

  Public
  WikiPathways Database

  bioinformaticsbiologypathway-analysis+ 2wikipathwayspathway-enrichment-analysis

  Shell

  •20•12•16•0•Updated Mar 3, 2026Mar 3, 2026

• wikipathways-assets

  Public
  Accessory files generated downstream of approved GPMLs

  Creative Commons Zero v1.0 Universal

  •1•0•0•0•Updated Mar 3, 2026Mar 3, 2026

• wikipathways-collection

  Public
  Java

  •1•0•1•0•Updated Mar 3, 2026Mar 3, 2026

• wikipathways-homology

  Public
  Pathway database for homology-mapped content

  Creative Commons Zero v1.0 Universal

  •0•2•0•0•Updated Mar 3, 2026Mar 3, 2026

• SPARQLQueries

  Public
  Queries for the WikiPathways SPARQL endpoint.

  sparqlrdfwikipathways

  Python

  •

  GNU General Public License v3.0

  •3•2•6•0•Updated Feb 22, 2026Feb 22, 2026

• wikipathways-data-release

  Public
  Monthly data release

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •0•1•2•0•Updated Feb 22, 2026Feb 22, 2026

• rdf-subdomain

  Public archive
  HTML

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Feb 21, 2026Feb 21, 2026

• wikipathways-iri-resolver

  Public
  Python

  •

  MIT License

  •0•0•10•0•Updated Feb 21, 2026Feb 21, 2026

• pywikipathways

  Public
  Python Client Package for WikiPathways

  pythonbiologywikipathways+ 1pathway-enrichment-analysis

  Python

  •

  MIT License

  •5•24•2•1•Updated Feb 17, 2026Feb 17, 2026

• Snorql-UI

  Public
  JavaScript

  •

  GNU General Public License v3.0

  •7•2•0•0•Updated Feb 4, 2026Feb 4, 2026

• academy

  Public
  Organized training examples for new WikiPathways authors

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •4•2•9•0•Updated Jan 25, 2026Jan 25, 2026

• sandbox-wp.gh.io

  Public
  Sandbox mirror of wikipathways.github.io

  HTML

  •0•0•0•0•Updated Jan 21, 2026Jan 21, 2026

• GPML2RDF

  Public
  GPML2RDF converter

  javasemantic-webwikipathways+ 1wikipathways-gpml-files

  Java

  •

  Apache License 2.0

  •2•4•42•0•Updated Jan 6, 2026Jan 6, 2026

• WikiPathwaysCurator

  Public
  Unit tests that validate the WikiPathways content and support the curation of the knowledge base.

  Java

  •

  MIT License

  •2•1•10•0•Updated Dec 28, 2025Dec 28, 2025

• meta-data-action

  Public
  Java

  •

  Apache License 2.0

  •3•1•2•1•Updated Dec 28, 2025Dec 28, 2025

• wikipathways-help

  Public
  1•1•5•0•Updated Dec 8, 2025Dec 8, 2025

• rWikiPathways

  Public
  R package for WikiPathways API

  bioinformaticspathwaysdata-access+ 1rpackage

  HTML

  •

  MIT License

  •6•17•6•0•Updated Nov 3, 2025Nov 3, 2025

• sandbox-wp-db

  Public
  Playground for new GPML processing and curation

  Shell

  •6•0•10•8•Updated Nov 1, 2025Nov 1, 2025

• gpml-sync-action

  Public
  under dev

  Java

  •

  Apache License 2.0

  •0•0•3•0•Updated Oct 14, 2025Oct 14, 2025

• gpml-cx2-ndex

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Aug 22, 2025Aug 22, 2025

• gpml-to-cx2

  Public
  GPML to CX2 Converter

  convertergpmlcx2

  JavaScript

  •2•2•5•0•Updated Aug 7, 2025Aug 7, 2025

• pfocr-database

  Public
  Jekyll setup and database for the Pathway Figure OCR project

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •4•0•7•0•Updated Aug 5, 2025Aug 5, 2025

• lipidmaps-wp-curation

  Public
  Curation of lipid pathways

  Java

  •1•2•0•0•Updated Jul 20, 2025Jul 20, 2025

• sr24-curation

  Public
  Java

  •0•0•0•0•Updated Jul 20, 2025Jul 20, 2025

• pfocr-pmcfigurebot

  Public
  Query figures indexed by PubMed Central and collect metadata

  R

  •

  Creative Commons Zero v1.0 Universal

  •4•1•0•0•Updated Jul 15, 2025Jul 15, 2025

• pyzenodo4wpdata

  Public
  A pyzenodo library for archiving versions of WikiPathways data files

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 16, 2025Jun 16, 2025

• WpVocabularies

  Public
  WikiPathways vocabularies for RDF representation

  Groovy

  •

  Apache License 2.0

  •3•1•6•0•Updated May 23, 2025May 23, 2025

• gpml2pvjson-js

  Public
  Convert GPML (WikiPathways XML format) to JSON-LD

  TypeScript

  •

  Apache License 2.0

  •1•2•8•19•Updated May 21, 2025May 21, 2025