Repositories list

• deepmriprep-train

  Public
  Train neural networks to preprocess MRIs

  Python

  •

  MIT License

  •0•1•0•0•Updated Nov 28, 2025Nov 28, 2025

• deepmriprep

  Public
  Neural network-based MRI preprocessing: Prep 🧠 images in seconds 🔥

  pythondeep-learningneuroimaging+ 6segmentationbrain-extractionskull-strippingmri-brainmri-segmentationvoxel-based-morphometry

  Python

  •

  MIT License

  •0•43•0•0•Updated Nov 28, 2025Nov 28, 2025

• photonai

  Public
  PHOTONAI is a high level python API for designing and optimizing machine learning pipelines.

  Python

  •

  GNU General Public License v3.0

  •17•81•8•2•Updated Nov 28, 2025Nov 28, 2025

• confound_corrected_cpm

  Public
  Python version of the Connectome-based Predictive Modelling framework

  Python

  •0•5•13•0•Updated Nov 28, 2025Nov 28, 2025

• photonai_projects

  Public
  Small Python package that manages PHOTONAI analyses.

  Python

  •0•1•0•0•Updated Nov 24, 2025Nov 24, 2025

• photonai_module_template

  Public template
  Module template repository for PHOTONAI modules

  pythondata-sciencemachine-learning

  Python

  •

  MIT License

  •1•0•0•3•Updated Nov 21, 2025Nov 21, 2025

• rermedic

  Public
  Guides für die rer. medic. Promotion an der Uni Münster

  TeX

  •0•12•0•0•Updated Nov 10, 2025Nov 10, 2025

• advanced-mml

  Public
  Course notebooks for "Advanced Medical Machine Learning"

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

• introduction-to-mml

  Public
  Course notebooks for "Introduction to Medical Machine Learning"

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

• brainage-distribution-bias

  Public
  Python

  •0•0•0•0•Updated Oct 14, 2025Oct 14, 2025

• mccqrnn_docker

  Public
  Dockerfile

  •

  GNU Affero General Public License v3.0

  •2•3•2•0•Updated Aug 13, 2025Aug 13, 2025

• nearest_neighbor_normativity

  Public
  Code for N³

  Python

  •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

• photonai_neuro

  Public
  Add-on module to simplify machine learning analyses for multimodal Magnetic Resonance Imaging (MRI) with photonai.

  Python

  •

  GNU General Public License v3.0

  •2•7•1•2•Updated Jan 29, 2025Jan 29, 2025

• gatenet

  Public
  Official implementation of GateNet

  gatingsingle-cellcytof+ 3flow-cytometrymass-cytometrycytometry

  Jupyter Notebook

  •0•9•2•0•Updated Jul 29, 2024Jul 29, 2024

• deepbet

  Public
  Fast brain extraction using neural networks

  pythondeep-learningneuroimaging+ 3segmentationbrain-extractionskull-stripping

  Python

  •

  MIT License

  •3•42•2•0•Updated Jul 23, 2024Jul 23, 2024

• c-trus

  Public
  0•2•0•0•Updated Feb 2, 2024Feb 2, 2024

• championat

  Public
  0•0•0•0•Updated Dec 7, 2023Dec 7, 2023

• photonai_graph

  Public
  Photon Graph is an extension for the PHOTON framework that allows for the use of machine learning based on graphs.

  machine-learninggraph-neural-networks

  Python

  •

  MIT License

  •1•10•8•4•Updated Nov 13, 2023Nov 13, 2023

• A-Systematic-Evaluation-of-Machine-Learning-based-Biomarkers-for-Major-Depressive-Disorder

  Public
  This is the accompanying repository for our manuscript titled "A Systematic Evaluation of Machine Learning-based Biomarkers for Major Depressive Disorder across Modalities".

  Python

  •0•3•0•0•Updated Oct 11, 2023Oct 11, 2023

• photonai_conformal

  Public
  Conformal Predictions using photonai

  machine-learninguncertainty-estimationconformal-prediction

  Python

  •

  MIT License

  •0•1•0•1•Updated Sep 4, 2023Sep 4, 2023

• photonai_brainhack23

  Public
  PHOTONAI is a high level python API for designing and optimizing machine learning pipelines.

  Python

  •

  GNU General Public License v3.0

  •17•0•5•1•Updated Jul 21, 2023Jul 21, 2023

• PCNtoolkit

  Public
  Toolbox for normative modelling and spatial inference of neuroimaging data. https://pcntoolkit.readthedocs.io/en/latest/

  Python

  •

  GNU General Public License v3.0

  •55•0•0•0•Updated Dec 16, 2022Dec 16, 2022

• uncertainty-brain-age

  Public
  Uncertainty aware brain age prediction

  machine-learningdeep-learninguncertainty+ 3uncertainty-neural-networksuncertainty-quantificationuncertainty-estimation

  Python

  •

  GNU Affero General Public License v3.0

  •1•3•0•0•Updated Dec 1, 2022Dec 1, 2022

• photonai_wizard

  Public
  A graphical code generator for PHOTONAI

  machine-learningdocker-image

  JavaScript

  •1•2•0•0•Updated Aug 11, 2022Aug 11, 2022

• GCN_MDD_Classification

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated Apr 11, 2022Apr 11, 2022

• photonai_explorer

  Public
  Web-App to inspect your training, optimization and evaluation results generated by PHOTONAI

  machine-learningdocker-image

  JavaScript

  •

  GNU Affero General Public License v3.0

  •1•2•0•0•Updated Mar 4, 2022Mar 4, 2022

• more-alike-than-different-paper2021

  Public
  Analyses and results for "More alike than different - Quantifying Abnormalities of Brain Structure and Function in Major Depressive Disorder across Nine Modalities"

  Python

  •2•2•0•0•Updated Sep 28, 2021Sep 28, 2021

• spm12

  Public
  SPM12

  MATLAB

  •

  Other

  •58•0•0•0•Updated Sep 3, 2021Sep 3, 2021

• photonai_explorer_serv

  Public
  Go app to serv the photon_explorer

  Go

  •

  GNU Affero General Public License v3.0

  •0•0•0•1•Updated Apr 28, 2021Apr 28, 2021

• resample

  Public
  Randomization-based inference in Python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •14•0•0•0•Updated Nov 17, 2020Nov 17, 2020