Repositories list

• functree-ng

  Public
  An interactive radial tree for functional hierarchies and omics data visualization

  metagenomicskegghierarchy-viewer+ 2

  metagenomicskegghierarchy-viewerontology-visualizationtree-visualization

  HTML

  •

  MIT License

  •6•26•5•5•Updated Mar 15, 2026Mar 15, 2026

• CRC_Associated_Community

  Public
  Python

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

• DeepRES

  Public
  A deep learning-based framework for comprehensive enzyme screening

  Python

  •

  MIT License

  •1•0•0•0•Updated Jul 23, 2025Jul 23, 2025

• earlyStageCRCTools

  Public
  The study to seek the early-stage specific CRC signatures.

  MIT License

  •0•0•0•0•Updated Mar 26, 2025Mar 26, 2025

• DeepES

  Public
  A deep learning-based framework for enzyme screening

  Python

  •

  MIT License

  •2•3•0•0•Updated May 21, 2024May 21, 2024

• CausCor

  Public
  R

  •

  Other

  •2•0•0•0•Updated Nov 11, 2023Nov 11, 2023

• locus-search

  Public
  Tools to search a locus, surrounding genes and UniRef cluster for UniProt query.

  Jupyter Notebook

  •1•0•0•0•Updated Mar 23, 2023Mar 23, 2023

• enteropathway_api_tutorial

  Public
  The tutorial of Enteropathway API

  0•1•0•0•Updated Mar 16, 2023Mar 16, 2023

• GastrectomyGC_Microbiome

  Public
  Custom script for gastrectomy paper: https://gut.bmj.com/content/early/2020/01/09/gutjnl-2019-319188

  Python

  •1•1•0•0•Updated Feb 10, 2020Feb 10, 2020

• human_skin_personal_identification

  Public
  R

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated May 30, 2018May 30, 2018

• domsign

  Public
  DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe

  Python

  •0•0•0•0•Updated Jan 20, 2018Jan 20, 2018