Merge branch 'master' into jn/dicyclic

Author: lgoettgens

Diff for: .github/workflows/BibtoolCI.yml

@@ -5,7 +5,11 @@ on:
     branches:
       - master
       - 'release-*'
+    paths-ignore:
+      - '*.md'
   pull_request:
+    paths-ignore:
+      - '*.md'
   workflow_dispatch:
 
 concurrency:

Diff for: .github/workflows/CI.yml

@@ -5,7 +5,11 @@ on:
     branches:
       - master
       - 'release-*'
+    paths-ignore:
+      - '*.md'
   pull_request:
+    paths-ignore:
+      - '*.md'
   schedule:
       # Every day at 3:10 AM UTC
       - cron: '10 3 * * *'
@@ -56,15 +60,6 @@ jobs:
           - julia-version: '1.10'
             group: 'long'
             os: [macOS, RPTU]  # runs on self-hosted runner
-          - julia-version: '1.10'
-            group: 'book'
-            os: [Linux, RPTU, normal-memory] # runs on self-hosted runner
-          - julia-version: 'pre'
-            group: 'book'
-            os: [Linux, RPTU, normal-memory] # runs on self-hosted runner
-          - julia-version: 'nightly'
-            group: 'book'
-            os: [Linux, RPTU, normal-memory] # runs on self-hosted runner
           # nightly on macos is disabled for now since the macos jobs take too long
           # with just 5 runners
           #- julia-version: 'nightly'
@@ -124,6 +119,51 @@ jobs:
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
 
+  book-tests:
+    runs-on: 'ubuntu-latest'
+    timeout-minutes: 80
+    strategy:
+      fail-fast: false
+      matrix:
+        julia-version:
+          - '1.10'
+          - 'pre'
+          - 'nightly'
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          # For Codecov, we must also fetch the parent of the HEAD commit to
+          # be able to properly deal with PRs / merges
+          fetch-depth: 2
+      - name: "Set up Julia"
+        id: setup-julia
+        uses: julia-actions/setup-julia@v2
+        with:
+          version: ${{ matrix.julia-version }}
+      - uses: julia-actions/cache@v2
+        if: runner.environment != 'self-hosted'
+        with:
+          cache-name: julia-cache;workflow=${{ github.workflow }};julia=${{ matrix.julia-version }};arch=${{ runner.arch }}
+          include-matrix: false
+      - name: "Build package"
+        uses: julia-actions/julia-buildpkg@v1
+      - name: "set test subgroup"
+        run: echo "OSCAR_TEST_SUBSET=book" >> $GITHUB_ENV
+      - name: "Run tests"
+        uses: julia-actions/julia-runtest@latest
+        with:
+          annotate: ${{ matrix.julia-version == '1.10' }}
+          coverage: ${{ matrix.julia-version == '1.10' }}
+      - name: "Process code coverage"
+        uses: julia-actions/julia-processcoverage@v1
+        with:
+          directories: src,experimental
+      - name: "Upload coverage data to Codecov"
+        continue-on-error: true
+        uses: codecov/codecov-action@v5
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+
   extra-long-test:
     # Extra long tests
     # Only happens during the daily run, triggered by schedule

Diff for: .github/workflows/Docstrings.yml

@@ -5,7 +5,11 @@ on:
     branches:
       - master
       - 'release-*'
+    paths-ignore:
+      - '*.md'
   pull_request:
+    paths-ignore:
+      - '*.md'
   workflow_dispatch:
 
 concurrency:

Diff for: .github/workflows/Docu.yml

@@ -6,7 +6,11 @@ on:
       - master
       - 'release-*'
     tags: '*'
+    paths-ignore:
+      - '*.md'
   pull_request:
+    paths-ignore:
+      - '*.md'
   workflow_dispatch:
 
 concurrency:

Diff for: .github/workflows/JuliaFormatterCI.yml

@@ -5,7 +5,11 @@ on:
     branches:
       - master
       - 'release-*'
+    paths-ignore:
+      - '*.md'
   pull_request:
+    paths-ignore:
+      - '*.md'
   workflow_dispatch:
 
 concurrency:

Diff for: .github/workflows/NoExperimental.yml

@@ -5,7 +5,11 @@ on:
     branches:
       - master
       - 'release-*'
+    paths-ignore:
+      - '*.md'
   pull_request:
+    paths-ignore:
+      - '*.md'
   workflow_dispatch:
 
 # needed to allow julia-actions/cache to delete old caches that it has created
@@ -85,19 +89,3 @@ jobs:
               using Oscar
               DocMeta.setdocmeta!(Oscar, :DocTestSetup, Oscar.doctestsetup(); recursive = true)
               doctest(Oscar)'
-
-  docs:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v4
-      - uses: julia-actions/setup-julia@latest
-        with:
-          version: '1.10'
-      - name: "Symlink NoExperimental_whitelist.jl"
-        run: ln -s NoExperimental_whitelist_.jl experimental/NoExperimental_whitelist.jl
-      - name: Build package
-        uses: julia-actions/julia-buildpkg@v1
-      - name: Install dependencies
-        run: julia --project=. --color=yes -e 'using Oscar; Oscar.doc_init(; path="docs/")'
-      - name: Build
-        run: julia --project=docs/ --color=yes docs/make.jl

Diff for: Artifacts.toml

@@ -7,12 +7,12 @@ lazy = true
     url = "https://zenodo.org/records/14611045/files/1511-03209.tar.gz"
 
 [QSMDB]
-git-tree-sha1 = "52686066016440cf2e6e286a923aed887658543c"
+git-tree-sha1 = "50dadf750f037e93b4514d91314e1990ff5db090"
 lazy = true
 
      [[QSMDB.download]]
-     sha256 = "2b0a368c07d368f3973352b7f6e856214e25383d2cc3a78c70415afe247a997e"
-     url = "https://github.com/oscar-system/Oscar.jl/releases/download/archive-tag-1/QSMDB-2.tar.gz"     
+     sha256 = "3903c6d7b14cea141ae4f5fd75ac97dca1d846596d6e11becd5f7c643cf69c36"
+     url = "https://github.com/oscar-system/Oscar.jl/releases/download/archive-tag-1/QSMDB-3.tar.gz"     
 
 [gap_extraperfect]
 git-tree-sha1 = "084fa12573e5089ceb3299f9d341f244b415da52"
@@ -30,3 +30,12 @@ lazy = true
     # gzip -9 -n -c perf33.grp > extraperfect/perf33.grp.gz
     # gtar --mtime="$(git log -1 --pretty=%cI)" --owner=0 --group=0 --numeric-owner -cvf extraperfect.tar extraperfect
     # gzip -n -c extraperfect.tar > extraperfect.tar.gz
+
+# to be used in the serialization upgrade tests from version 1.3 to 1.4
+[version-1-3-0-files]
+git-tree-sha1 = "231c660234d515a682a698764042cd9dae90361b"
+lazy = true
+
+     [[version-1-3-0-files.download]]
+     sha256 = "cd475445c983883d84a4ac29910d75f8b681ca1a99eb8f18f8164d2caa8704c3"
+     url = "https://github.com/oscar-system/Oscar.jl/releases/download/archive-tag-1/version_1_3_0_files.tar.gz"