bump Diamond dependency to v2.2.0

Author: oschwengers

bakta/utils.py

@@ -46,7 +46,7 @@ def print_version(self):
 DEPENDENCY_PILERCR = (Version(1, 6), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'PilerCR', ('pilercr', '-options'), ['--skip-crispr'])
 DEPENDENCY_PYRODIGAL = (Version(3, 7, 0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Pyrodigal', (sys.executable, '-c', 'import pyrodigal; print(pyrodigal.__version__)'), ['--skip-cds'])
 DEPENDENCY_PYHMMER = (Version(0, 12, 0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Pyhmmer', (sys.executable, '-c', 'import pyhmmer; print(pyhmmer.__version__)'), ['--skip-cds', '--skip-sorf'])
-DEPENDENCY_DIAMOND = (Version(2, 1, 22), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Diamond', ('diamond', 'help'), ['--skip-cds', '--skip-sorf'])
+DEPENDENCY_DIAMOND = (Version(2, 2, 0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Diamond', ('diamond', 'help'), ['--skip-cds', '--skip-sorf'])
 DEPENDENCY_BLASTN = (Version(2, 17, 0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'Blastn', ('blastn', '-version'), ['--skip-ori'])
 DEPENDENCY_AMRFINDERPLUS = (Version(4, 2, 7), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'AMRFinderPlus', ('amrfinder', '--version'), ['--skip-cds'])
 DEPENDENCY_PYCIRCLIZE = (Version(1, 7, 0), Version(VERSION_MAX_DIGIT, VERSION_MAX_DIGIT, VERSION_MAX_DIGIT), VERSION_REGEX, 'pyCirclize', (sys.executable, '-c', 'import pycirclize; print(pycirclize.__version__)'), ['--skip-plot'])

environment.yml

@@ -16,7 +16,7 @@ dependencies:
   - infernal>=1.1.5
   - piler-cr
   - pyhmmer>=0.12.0
-  - diamond>=2.1.22
+  - diamond>=2.2.0
   - blast>=2.17.0
   - ncbi-amrfinderplus>=4.2.7
   - pycirclize>=1.7.0