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Repository with script used for pilot personalized genomes analysis of NA12878.
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scripts
- Scripts used to generate personalized mapping databases for the STAR RNA-seq aligner.
- pysrc
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Python scripts used for quantification across both the maternal and paternal genome, based on Pysam (counting.py).
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Helper scripts to evaluate (evaluate.py) alternative personalized references and generate summary tables (comparison_table.py).