NOTICE

NOTICE

This repository contains AI-assisted, Python 3–compatible ports and/or modifications
of selected scripts from the OligoMiner project.

Upstream attribution:
- OligoMiner scripts were originally developed by the Molecular Systems Lab
  (Wyss Institute for Biologically-Inspired Engineering, Harvard University) and
  are distributed under the MIT License.
- This repository redistributes modified versions under the same MIT License.
  See LICENSE for the full text.

Unofficial status:
- This is an unofficial port and is not affiliated with or endorsed by the
  original authors or institutions.

Third-party tools and libraries:
- The workflow commonly uses external tools such as Bowtie2 and Jellyfish (k-mer counter; Bioconda package: kmer-jellyfish), and
  Python libraries such as NumPy, SciPy, scikit-learn, and Biopython.
- These third-party components are NOT included in this repository and are
  installed separately by the user. They are licensed under their respective
  licenses (e.g., Bowtie2: GPLv3; Jellyfish: GPL-family; scikit-learn: BSD-3;
  Biopython: Biopython License/BSD-style).

Publication:
- The original OligoMiner method is described in: doi:10.1073/pnas.1714530115

No warranty:
- This software is provided "AS IS" without warranty of any kind. See LICENSE.