fixed seqspec check to check url when urltype is https, updated fixture specs to be v0.4.0

Author: sbooeshaghi

seqspec/seqspec_check.py

@@ -243,7 +243,7 @@ def check_onlist_files_exist(spec, errors, idx):
                         errors.append(errobj)
                         idx += 1
                 else:
-                    if not file_exists(ol.filename):
+                    if not file_exists(ol.url):
                         errobj = {
                             "error_type": "check_onlist_files_exist",
                             "error_message": f"{ol.filename} does not exist",

tests/fixtures/spec.yaml

@@ -1,4 +1,4 @@
-seqspec_version: 0.3.0
+seqspec_version: 0.4.0
 assay_id: DOGMAseq-DIG
 name: DOGMAseq-DIG/Illumina
 doi: https://doi.org/10.1186/s13059-022-02698-8