allwave/Cargo.toml at 403e44e853b1fe71844798076c1029db7ded7e68 · pangenome/allwave · GitHub

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[package]
name = "allwave"
version = "0.1.0"
edition = "2021"
authors = ["Erik Garrison"]
description = "High-performance pairwise sequence aligner using bidirectional wavefront alignment"
license = "MIT"
repository = "https://github.com/pangenome/allwave"
readme = "README.md"
keywords = ["bioinformatics", "alignment", "wavefront", "genomics"]
categories = ["science", "command-line-utilities"]

[lib]
name = "allwave"
path = "src/lib.rs"

[[bin]]
name = "allwave"
path = "src/main.rs"

[dependencies]
bio = "1.4"
clap = { version = "4.5", features = ["derive"] }
edlib_rs = "0.1"
indicatif = { version = "0.17", features = ["rayon"] }
# faigz-rs = { git = "https://github.com/waveygang/faigz-rs.git", rev = "06799b07bfca219f4eef844b43f7d8c3ef5f3d6f" }
noodles = { version = "0.94", features = ["fasta", "bgzf"] }
lib_wfa2 = { git = "https://github.com/ekg/lib_wfa2", rev = "819b82cd842aabedcb962fd5b82380fe454234f6" }
rand = "0.8"
rayon = "1.8"
tempfile = "3.0"
atty = "0.2"

# Debug binaries - not built by default
# To build these, use: cargo build --bin <name>
# To run these, use: cargo run --bin <name>
[[bin]]
name = "check_wfa_ops"
path = "tests/debug/check_wfa_ops.rs"
required-features = ["debug-bins"]

[[bin]]
name = "debug_align"
path = "tests/debug/debug_align.rs"
required-features = ["debug-bins"]

[[bin]]
name = "debug_cigar"
path = "tests/debug/debug_cigar.rs"
required-features = ["debug-bins"]

[[bin]]
name = "debug_problem"
path = "tests/debug/debug_problem.rs"
required-features = ["debug-bins"]

[[bin]]
name = "debug_wfa"
path = "tests/debug/debug_wfa.rs"
required-features = ["debug-bins"]

[[bin]]
name = "test_allwave"
path = "tests/debug/test_allwave.rs"
required-features = ["debug-bins"]

[[bin]]
name = "test_cigar_interpretation"
path = "tests/debug/test_cigar_interpretation.rs"
required-features = ["debug-bins"]

[[bin]]
name = "test_wfa_order"
path = "tests/debug/test_wfa_order.rs"
required-features = ["debug-bins"]

[[bin]]
name = "verify_memory_mode"
path = "tests/debug/verify_memory_mode.rs"
required-features = ["debug-bins"]

[features]
# Feature flag to enable debug binaries
debug-bins = []