diff --git a/Cargo.lock b/Cargo.lock
index d2f98d6..a95148b 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -954,9 +954,9 @@ dependencies = [
 
 [[package]]
 name = "noodles"
-version = "0.94.0"
+version = "0.103.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8b48cf7584b1a4c8efaa99796eca1b2cde5efc2c6c4b6680fe23ed3403bd77ea"
+checksum = "0fe3421906261ed39529078e710e3769efdd4f276853235ce5117813bd385533"
 dependencies = [
  "noodles-bgzf",
  "noodles-fasta",
@@ -964,11 +964,10 @@ dependencies = [
 
 [[package]]
 name = "noodles-bgzf"
-version = "0.37.0"
+version = "0.45.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bb4a45ef5a49e622bcd33cbf9a8323ad3c2b8dd2395526354bc901983295fcf8"
+checksum = "51c6a40480d211d9db28956b77443cac7c90b2d3d775f02e9c3fdf67ef8d611a"
 dependencies = [
- "byteorder",
  "bytes",
  "crossbeam-channel",
  "flate2",
@@ -976,21 +975,20 @@ dependencies = [
 
 [[package]]
 name = "noodles-core"
-version = "0.17.0"
+version = "0.18.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ce89752158657dd1d7195061e9d9190e2d3bb594eb71086762163d4a430b0b4b"
+checksum = "8ebfc6396fb51059c98a35bb81b96422ac41ea1bc60b6c8e9c6b2550212e9493"
 dependencies = [
  "bstr",
 ]
 
 [[package]]
 name = "noodles-fasta"
-version = "0.50.0"
+version = "0.58.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "70fcad7421d77cc23062a7e26b08933d1eeb471cd91318be1a7c3398bd835f45"
+checksum = "3e929a025d64f44c5e063cd8fc370fd002eb771942a458205d4fd6836fb22fe6"
 dependencies = [
  "bstr",
- "bytes",
  "memchr",
  "noodles-bgzf",
  "noodles-core",
diff --git a/Cargo.toml b/Cargo.toml
index bd6486b..5e8318a 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -24,7 +24,7 @@ clap = { version = "4.4", features = ["derive"] }
 edlib_rs = "0.1"
 indicatif = { version = "0.17", features = ["rayon"] }
 # faigz-rs = { git = "https://github.com/waveygang/faigz-rs.git", rev = "06799b07bfca219f4eef844b43f7d8c3ef5f3d6f" }
-noodles = { version = "0.94", features = ["fasta", "bgzf"] }
+noodles = { version = "0.103", features = ["fasta", "bgzf"] }
 lib_wfa2 = { git = "https://github.com/ekg/lib_wfa2", rev = "819b82cd842aabedcb962fd5b82380fe454234f6" }
 rand = "0.8"
 rayon = "1.8"