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where_hprc_data.md

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where_hprc_data.md

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metadata

HPRC metadata can be found here

#of haplotypes continental_group 70 AFR 44 AMR 50 EAS 30 EUR 36 SAS 4 Unclassified

data

  1. sequences in agc format:

wget https://s3-us-west-2.amazonaws.com/human-pangenomics/submissions/B4174A5F-F20E-4DCF-8470-F8A907B640BC--HPRCv2_0.6.1_pr_agc_submission/HPRC_r2_assemblies_0.6.1.agc

  1. alignment of sequences against chm13: wget https://garrisonlab.s3.amazonaws.com/hprcv2/pafs/hprc465vschm13.aln.paf.gz

wget https://garrisonlab.s3.amazonaws.com/hprcv2/pafs/hprc465vschm13.aln.paf.gz.gzi

  1. implicit graph (chm13)

wget https://garrisonlab.s3.amazonaws.com/hprcv2/impg/hprc465vschm13.aln.paf.gz.impg