README.md

UMCCR Gen3 Doc

Contains documentation and notes for UMCCR Gen3 setup

Context

Establishing Gen3 to enable better Human Genome Data sharing in Australia

• https://www.biocommons.org.au/gen3-project

Deployment

• POC Setup
• Cloud Setup
• CILogon

Notes

• User Guide
• Submit
• Workshop

Documentation

• Managing Human Genome Data using Gen3

Deployment Manifest

The following repo contains (Cloud Automation) deployment manifest for UMCCR managed Data Commons sites.

• https://github.com/umccr/cdis-manifest

Data Dictionary

The following repo contains dictionary tools (i.e. conversion, visualisation, validation, etc) that wrap up as Makefile/Docker workflow to allow data modeller to iteratively develop schema locally.

• https://github.com/umccr/umccr-dictionary

CLI Tool: g3po

The following repo contains assorted utility CLI to work with Gen3.

• https://github.com/umccr/g3po