BambooIntegration

`class Witness { String id; Token[] tokens; }

Witness[] tokenize(String[] sources, @Null Object parameters);

CollationRef align(Witness[] witnesses, @Null Witness base, Function matches); // boolean matches(Token a, Token b)

AlignmentTable toAlignmentTable(CollationRef collation, Sigil[] returnSet); AlignmentTable toAlignmentTable(CollationRef collation); // return all witnesses AlignmentTable toAlignmentTable(VariantGraph vg);

VariantGraph toVariantGraph(CollationRef collation);

DifferenceSet toDifferenceSet(CollationRef collation, Sigil[] returnSet);`