Blast+ Wrapper: blastdbcmd: Support for -range parameter

[M-Enders]

The blastdbcmd comes with the feature to extract a given range of the sequence:

-Range string Range of sequence to extract (Format: start-stop)

Is this parameter / functionality also part of the wrapper, how can I use this functionality?

[peterjc]

For reference, the galaxy-dev mailing list thread was:

• http://lists.bx.psu.edu/pipermail/galaxy-dev/2014-October/020725.html
• http://lists.bx.psu.edu/pipermail/galaxy-dev/2014-October/020729.html
• http://lists.bx.psu.edu/pipermail/galaxy-dev/2014-October/020730.html

My answer there was you can't (yet) do this via the BLAST+ wrappers. You would have to pull out the full sequences using the makeblastdb wrapper, then edit them with another Galaxy tool. Or work directly from the FASTA file if you have it.

[peterjc]

Correction, blastdbcmd wrapper.