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NEWS.md

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changes in version 2.0.0

  • Added a NEWS.md file to track changes to the package.

  • Changed default output of most functions from SlingshotDataSet to PseudotimeOrdering and added conversion functions between them and SingleCellExperiment.

  • getLineages now relies on createClusterMST

  • Removed plotGenePseudotime

  • added as.df option to slingCurves and slingMST, which provide relevant information for plotting as data.frame objects. This should help those plotting Slingshot results with ggplot, especially for our traffic package.

  • updated all documentation.