-
Added a
NEWS.md
file to track changes to the package. -
Changed default output of most functions from
SlingshotDataSet
toPseudotimeOrdering
and added conversion functions between them andSingleCellExperiment
. -
getLineages
now relies oncreateClusterMST
-
Removed
plotGenePseudotime
-
added
as.df
option toslingCurves
andslingMST
, which provide relevant information for plotting asdata.frame
objects. This should help those plotting Slingshot results withggplot
, especially for ourtraffic
package. -
updated all documentation.