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Search.setIndex({"alltitles": {"0. Simulate some sample datasets": [[25, "0.-Simulate-some-sample-datasets"]], "1. Load an Example Model": [[18, "1.-Load-an-Example-Model"]], "1. PC algorithm": [[25, "1.-PC-algorithm"]], "1. Standard simulation": [[24, "1.-Standard-simulation"]], "2. Defining the Model Manually": [[18, "2.-Defining-the-Model-Manually"]], "2. Hill-Climb Search Algorithm": [[25, "2.-Hill-Climb-Search-Algorithm"]], "2. Simulation under specified evidence": [[24, "2.-Simulation-under-specified-evidence"]], "3. GES algorithm": [[25, "3.-GES-algorithm"]], "3. Generating a Random Model": [[18, "3.-Generating-a-Random-Model"]], "3. Simulation under soft/virtual evidence": [[24, "3.-Simulation-under-soft/virtual-evidence"]], "4. Expert In Loop Algorithm": [[25, "4.-Expert-In-Loop-Algorithm"]], "4. Simulation under specified intervention": [[24, "4.-Simulation-under-specified-intervention"]], "5. Simulation under soft/virtual intervention": [[24, "5.-Simulation-under-soft/virtual-intervention"]], "6. Partial samples": [[24, "6.-Partial-samples"]], "AIC Score": [[58, "aic-score"]], "Algorithms": [[31, "algorithms"]], "Approximate Inference": [[1, null]], "Approximate Inference Using Sampling": [[0, null]], "Attributes of the Model Structure": [[16, "Attributes-of-the-Model-Structure"]], "BDeu Score": [[58, "bdeu-score"]], "BDs Score": [[58, "bds-score"]], "BIC Score": [[58, "bic-score"]], "BIF (Bayesian Interchange Format)": [[49, null]], "Base Model Structures": [[5, null]], "Base Structure Classes": [[4, null]], "Basic Operations on Bayesian Networks": [[16, null]], "Bayesian Estimator": [[44, null]], "Bayesian Model Sampling": [[2, null]], "Bayesian Network": [[34, null]], "Belief Propagation": [[8, null]], "Belief Propagation with Message Passing": [[9, null]], "CPD with random values": [[21, "CPD-with-random-values"]], "Causal Games": [[17, null]], "Causal Inference": [[10, null]], "Citation": [[31, "citation"]], "Cluster Graph": [[35, null]], "Conditional Gaussian AIC Score": [[58, "conditional-gaussian-aic-score"]], "Conditional Gaussian BIC Score": [[58, "conditional-gaussian-bic-score"]], "Conditional Gaussian Log-Likelihood Score": [[58, "conditional-gaussian-log-likelihood-score"]], "Conditional Independence Tests for PC algorithm": [[60, "module-pgmpy.estimators.CITests"]], "Creating Linear Gaussian Bayesian Networks": [[18, null]], "D-Separation": [[16, "D-Separation"]], "Directed Acyclic Graph (DAG)": [[4, "module-pgmpy.base.DAG"], [5, "directed-acyclic-graph-dag"]], "Discrete": [[28, null]], "Discrete Factor": [[28, "module-pgmpy.factors.discrete.DiscreteFactor"]], "Discretizing Hamiltonian\u2019s Equations": [[6, "Discretizing-Hamiltonian's-Equations"]], "Discretizing Methods": [[29, null]], "Dynamic Bayesian Network (DBN)": [[36, null]], "Dynamic Bayesian Network Inference": [[11, null]], "Elimination Ordering": [[14, "module-pgmpy.inference.EliminationOrder"]], "Euler\u2019s Method": [[6, "Euler's-Method"]], "Exact Inference": [[7, null]], "Example Notebooks": [[15, null]], "Example: Simulating Hamiltonian dynamics of a simple pendulum": [[6, "Example:-Simulating-Hamiltonian-dynamics-of-a-simple-pendulum"]], "Examples": [[31, "examples"]], "Exhaustive Search": [[55, null]], "Expectation Maximization (EM)": [[45, null]], "Expert In The Loop": [[56, null]], "Extending pgmpy": [[20, null]], "Factor Graph": [[37, null]], "First, create a Naive Bayes graph": [[26, "First,-create-a-Naive-Bayes-graph"]], "Gaussian AIC Score": [[58, "gaussian-aic-score"]], "Gaussian BIC Score": [[58, "gaussian-bic-score"]], "Gaussian Log-Likelihood Score": [[58, "gaussian-log-likelihood-score"]], "Generate a completely random model": [[18, "Generate-a-completely-random-model"]], "Generate random CPDs for a given network structure": [[18, "Generate-random-CPDs-for-a-given-network-structure"]], "Gibbs Sampling": [[3, null]], "Greedy Equivalence Search (GES)": [[57, null]], "Hamiltonian Dynamics": [[6, "Hamiltonian-Dynamics"]], "Hamiltonian Monte Carlo": [[6, "Hamiltonian-Monte-Carlo"]], "Hamiltonian Monte Carlo Algorithm": [[6, "Hamiltonian-Monte-Carlo-Algorithm"]], "Hamiltonian Monte Carlo in pgmpy": [[6, "Hamiltonian-Monte-Carlo-in-pgmpy"]], "Hamiltonian Monte Carlo with dual averaging": [[6, "Hamiltonian-Monte-Carlo-with-dual-averaging"]], "Hamiltonian and Probability: Canonical Distributions": [[6, "Hamiltonian-and-Probability:-Canonical-Distributions"]], "Hill Climb Search": [[58, null]], "How to define TabularCPD and LinearGaussianCPD": [[21, null]], "Indices and tables": [[31, "indices-and-tables"]], "Inference in Discrete Bayesian Network": [[22, null]], "Joint Probability Distribution": [[28, "module-pgmpy.factors.discrete.JointProbabilityDistribution"]], "K2 Score": [[58, "k2-score"]], "Leapfrog Method": [[6, "Leapfrog-Method"]], "Learning Tree-augmented Naive Bayes (TAN) Structure from Data": [[26, null]], "Linear Gaussian Bayesian Network": [[38, null]], "Linear Gaussian CPD": [[30, null]], "LinearGaussianCPD for continuous variables": [[21, "LinearGaussianCPD-for-continuous-variables"]], "MPLP": [[13, null]], "Markov Chain": [[39, null]], "Markov Network": [[40, null]], "Maximum Likelihood Estimator": [[46, null]], "Metrics for testing models": [[32, null]], "Mmhc Estimator": [[59, null]], "Model Testing": [[12, null]], "Models": [[33, null]], "Modifying associated parameterization": [[16, "Modifying-associated-parameterization"]], "Modifying the Model Structure": [[16, "Modifying-the-Model-Structure"]], "Naive Bayes": [[41, null]], "Next, generate sample data from our Bayesian network": [[26, "Next,-generate-sample-data-from-our-Bayesian-network"]], "No-U-Turn Sampler": [[6, "No-U-Turn-Sampler"]], "No-U-Turn Sampler with dual averaging": [[6, "No-U-Turn-Sampler-with-dual-averaging"]], "Now we are ready to learn the TAN structure from sample data": [[26, "Now-we-are-ready-to-learn-the-TAN-structure-from-sample-data"]], "Objective of the Games": [[17, "Objective-of-the-Games"]], "Other Methods": [[16, "Other-Methods"]], "PC (Constraint-Based Estimator)": [[60, null]], "Parameter Estimation": [[43, null]], "Parameter Learning in Discrete Bayesian Networks": [[23, null]], "Parameterization": [[27, null]], "Partial Directed Acyclic Graph (PDAG)": [[5, "partial-directed-acyclic-graph-pdag"]], "Partially Directed Acyclic Graph (PDAG or CPDAG)": [[4, "module-pgmpy.base.PDAG"]], "Public Methods": [[36, "public-methods"]], "Reading/Writing to File": [[48, null]], "Reference": [[47, "reference"], [49, "reference"], [50, "reference"], [51, "reference"], [52, "reference"], [52, "id1"]], "Sampling In Continuous Graphical Models": [[6, null]], "Second, add interaction between the features": [[26, "Second,-add-interaction-between-the-features"]], "Shortcut for learning and adding CPDs to the model": [[23, "Shortcut-for-learning-and-adding-CPDs-to-the-model"]], "Simulating Data From Bayesian Networks": [[24, null]], "Step 0: Generate some simulated data and a model structure": [[23, "Step-0:-Generate-some-simulated-data-and-a-model-structure"]], "Step 1: Define the model.": [[22, "Step-1:-Define-the-model."]], "Step 2: Initialize the inference class": [[22, "Step-2:-Initialize-the-inference-class"]], "Step 3: Doing Inference using hard evidence": [[22, "Step-3:-Doing-Inference-using-hard-evidence"]], "Step 4: Troubleshooting for slow inference": [[22, "Step-4:-Troubleshooting-for-slow-inference"]], "Step 5: Inference using virtual evidence": [[22, "Step-5:-Inference-using-virtual-evidence"]], "Structural Equation Model Estimators": [[47, null]], "Structural Equation Models (SEM)": [[42, null]], "Structure Learning": [[54, null]], "Structure Learning in Bayesian Networks": [[25, null]], "Structure Scores": [[58, "structure-scores"]], "Support for coustom Models": [[6, "Support-for-coustom-Models"]], "Supported Data Types": [[31, null]], "Tabular CPD with multiple evidence.": [[21, "Tabular-CPD-with-multiple-evidence."]], "TabularCPD": [[28, "module-pgmpy.factors.discrete.CPD"]], "TabularCPD for discrete variables": [[21, "TabularCPD-for-discrete-variables"]], "Then, parameterize our graph to create a Bayesian network": [[26, "Then,-parameterize-our-graph-to-create-a-Bayesian-network"]], "To parameterize the learned graph from data, check out the other tutorials for more info": [[26, "To-parameterize-the-learned-graph-from-data,-check-out-the-other-tutorials-for-more-info"]], "Tutorial Notebooks": [[61, null]], "UAI": [[50, null]], "Using Expectation Maximization": [[23, "Using-Expectation-Maximization"]], "Using the Bayesian Estimator": [[23, "Using-the-Bayesian-Estimator"]], "Using the Maximumum Likelihood Estimator": [[23, "Using-the-Maximumum-Likelihood-Estimator"]], "Variable Elimination": [[14, null]], "XMLBIF": [[52, null]], "XMLBeliefNetwork": [[51, null]]}, "docnames": ["approx_infer/approx_infer", "approx_infer/base", "approx_infer/bn_sampling", "approx_infer/gibbs", "base", "base/base", "detailed_notebooks/8. 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