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url: https://pharmaverse.github.io/admiraldev/
template:
math-rendering: mathjax
bootstrap: 5
light-switch: true
bslib:
preset: "flatly"
primary: "#2c3e50"
navbar-bg: "#2c3e50"
params:
bootswatch: flatly
includes:
css: pkgdown/extra.css
in_header: |
<script
async
src="https://widget.kapa.ai/kapa-widget.bundle.js"
data-website-id="2c7249cc-f1dc-4a63-8674-6ecbcb34d95c"
data-project-name="admiral"
data-project-color="#2c3e50"
data-project-logo="https://pharmaverse.github.io/admiraldev/logo.png"
data-consent-required="true"
data-user-analytics-cookie-enabled="true"
data-consent-screen-title="Help us improve our AI assistant"
data-consent-screen-disclaimer="By clicking 'Allow tracking', you consent to anonymous user tracking which helps us improve our service. We don't collect any personally identifiable information."
data-consent-screen-accept-button-text="Allow tracking"
data-consent-screen-reject-button-text="No, thanks"
data-modal-example-questions="Tell me a little about the {admiraldev} package., What assertion checks are provided by {admiraldev}?"
data-modal-search-placeholder="Ask me a question about {admiraldev} or the {admiral} ecosystem..."
data-modal-z-index="9999"
></script>
<script>
document.addEventListener("DOMContentLoaded", function () {
// Select all navbar links that have an aria-label
var navLinks = document.querySelectorAll('.navbar-nav .nav-link[aria-label]');
navLinks.forEach(function (link) {
// Initialize Bootstrap 5 Tooltip
link.setAttribute('title', link.getAttribute('aria-label'));
new bootstrap.Tooltip(link, {
placement: 'bottom', // Tooltip appears below the icon
trigger: 'hover'
});
});
});
</script>
repo:
url:
home: https://github.com/pharmaverse/admiraldev
source: https://github.com/pharmaverse/admiraldev/blob/main/
issue: https://github.com/pharmaverse/admiraldev/issues/
user: https://github.com/
news:
cran_dates: true
home:
links:
- text: 🌍 {admiral} ecosystem 🌍
href: https://pharmaverse.org/e2eclinical/adam/
development:
mode: auto
authors:
before: "We define *authors* as those who are actively maintaining the code base, and *contributors* as those who made a significant contribution in the past."
footer:
roles: [aut, ctb]
text: "Developed by F. Hoffmann-La Roche AG, GlaxoSmithKline LLC,"
sidebar:
roles: [aut, fnd]
F. Hoffmann-La Roche AG:
html: "<a href='https://www.roche.com/'><img src='man/figures/roche_logo.png' height='34' alt='Roche logo' /></a>"
href: https://roche.com/
GlaxoSmithKline LLC:
html: "<a href='https://www.gsk.com/'><img src='man/figures/gsk_logo.png' height='20' alt='GSK logo' /></a>"
href: https://gsk.com/
reference:
- title: Assertion Functions
desc: Checks the inputs for user-facing functions and provides error, warnings and other messaging around expectation of inputs.
contents:
- has_keyword('assertion')
- title: Get Functions
desc: Gets information or input from an object
contents:
- has_keyword('get')
- title: Is Functions
desc: Is the object what it says it is
contents:
- has_keyword('is')
- title: What Functions
desc: What type of object is this?
contents:
- has_keyword('what')
- title: Warning Functions
desc: Custom warnings intended for users
contents:
- has_keyword('warnings')
- title: Test Helper Functions
desc: Test Utilities that help with organization and presentation of tests
contents:
- has_keyword('test_helper')
- title: Temporary Variables
desc: Tools for creating and removing temporary variables within a dataset
contents:
- has_keyword('tmp_vars')
- title: Quosure Helper Functions
desc: Helping your quosure needs
contents:
- has_keyword('quo')
- title: Quoting Helper Functions
desc: Helping your quoting needs
contents:
- has_keyword('quote')
- title: Utilities used within Derivation Functions
contents:
- has_keyword('utils_help')
- title: Documentation Functions
desc: Functions for generating documentation
contents:
- has_keyword('documentation')
- title: Miscellaneous
desc: Utilities without a theme
contents:
- has_keyword('dev_utility')
- has_keyword('messages')
- title: Deprecated
desc: |
Functions and arguments may need to be removed or replaced over time.
In such cases, the function or argument will enter a 3 year deprecation cycle.
The cycle will be tied as close as sensibly possible to a package release.
When a function is deprecated:
* In Year 1 there will be a message issued if you use the function/argument, but it will still be available to use.
* In Year 2 a warning will be produced if you use the function/argument, but it will still be available to use.
* In Year 3, an error will be produced if you use the function/argument and no longer be able to use.
* Finally, after 3 years, the function/argument and related documentation and tests will be removed from `{admiral}`.
*Note: Guidance on replacement functionality will be found in the message produced as well as in the function's
documentation*
Below, you can find a list of functions in the process of being deprecated:
contents:
- has_keyword("deprecated")
navbar:
structure:
left: [getstarted, reference, articles, news]
right: [search, slack, newissue, github, lightswitch]
components:
reference:
text: Reference
href: reference/index.html
articles:
text: Developer Guides
menu:
- text: Programming Strategy
href: articles/programming_strategy.html
- text: Writing Vignettes
href: articles/writing_vignettes.html
- text: Writing Custom Examples
href: articles/writing_custom_examples.html
- text: Unit Test Guidance
href: articles/unit_test_guidance.html
- text: Guidance for git and GitHub Usage
href: articles/git_usage.html
- text: Pull Request Review Guidance
href: articles/pr_review_guidance.html
- text: R CMD Issues
href: articles/rcmd_issues.html
- text: Release Strategy
href: articles/release_strategy.html
- text: Test Data Guidance
href: articles/test_data_guidance.html
- text: Package Extensions
href: articles/package_extensions.html
slack:
icon: fa-slack
href: https://pharmaverse.slack.com/
aria-label: Join the pharmaverse Slack!
newissue:
icon: fa-bug
href: https://github.com/pharmaverse/admiraldev/issues/new/choose
aria-label: Report an issue