devcontainer.json

{
	// https://containers.dev/implementors/json_reference/
	"name": "Admiral R-4.1 (RStudio) container",
	"image": "ghcr.io/pharmaverse/admiralci-4.1:latest",
	// Install Dev Container Features. More info: https://containers.dev/features
	"containerEnv": {
		"ROOT": "true",
		"PASSWORD": "rstudio",
		"DISABLE_AUTH": "true",
		"RENV_AUTOLOADER_ENABLED": "false"
	},
	"features": {
		"ghcr.io/rocker-org/devcontainer-features/r-rig:1": {
			"version": "none",
			"vscodeRSupport": "full",
			"installRadian": true,
			"installVscDebugger": true
		},
		"ghcr.io/rocker-org/devcontainer-features/renv-cache:latest": {},
		"ghcr.io/devcontainers/features/common-utils:2": {
			"installZsh": true,
			"configureZshAsDefaultShell": false,
			"installOhMyZsh": true,
			"username": "rstudio",
			"upgradePackages": false
		},
		"ghcr.io/mikaello/devcontainer-features/modern-shell-utils:1": {}
	},
	"init": true,
	"overrideCommand": false,
	
	"postCreateCommand": "bash ./.devcontainer/postCreateCommand.sh",

	"postAttachCommand": "$BROWSER \"https://${CODESPACE_NAME}-8787.${GITHUB_CODESPACES_PORT_FORWARDING_DOMAIN}/\"; echo 'To open rstudio in your browser, just type rstudio in the terminal'",

	"customizations": {
		"vscode": {
			"settings": {
				"r.rterm.linux": "/usr/local/bin/radian",
				"r.bracketedPaste": true,
				"editor.bracketPairColorization.enabled": true, 
				"editor.guides.bracketPairs": "active"
			},
			"extensions": [
				"vsls-contrib.codetour",
				"GitHub.copilot",
				"GitHub.copilot-chat",
				// R extensions
				"ikuyadeu.r",
				"REditorSupport.r-lsp",
				// Extra extension
				"streetsidesoftware.code-spell-checker",
				"eamodio.gitlens",
				"cweijan.vscode-office",
				"donjayamanne.githistory",
				"GitHub.vscode-github-actions",
				"GitHub.vscode-pull-request-github",
				"GitHub.remotehub",
				"alefragnani.Bookmarks",
				"vscode-icons-team.vscode-icons"
			]
		}
	},

	// RStudio ports
	"forwardPorts": [8787],
	"portsAttributes": {
		"8787": {
			"label": "Rstudio",
			"requireLocalPort": true,
			"onAutoForward": "openBrowser"
		}
	},
	// Uncomment to connect as root instead. More info: https://aka.ms/dev-containers-non-root
	"remoteUser": "rstudio"
}