nextflow.config

/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    RutiSeq-nf Nextflow config file
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Default config options for all compute environments
----------------------------------------------------------------------------------------
*/

// Enable DSL2
nextflow.enable.dsl = 2

// Main nextflow.config file
includeConfig 'conf/params.config'
includeConfig 'conf/profiles.config' 
includeConfig 'conf/reports.config'

// Include SGE resources only when using SGE profile
includeConfig 'conf/SGE_resources.config'

manifest {
        name            = 'RutiSeq-nf'
        author          = 'Poppy J. Hesketh Best'
        homePage        = 'https://github.com/phesketh-igtp/TBSEQ.cat-nf'
        description     = 'Mapping, variant calling and genomic clustering for the ongoing monitoring of MTB outbreaks in Catalunya'
        mainScript      = 'main.nf'
        nextflowVersion = '>24.10.2'
        version         = '0.7.0 [pre_release]'
    }