2.2.3

🐛 Bug Fix

• Update PyYAML minimal requirements to avoid "FullLoader" attribute errors. #330 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

2.2.2

🐛 Bug Fix

• Fix auto release workflow settings #323 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

2.2.1

🐛 Bug Fix

• Make sure we delete testing files after finishing tests #307 (@vinferrer)
• Add label colours to set auto labels #318 (@smoia)
• Reduce auto verbosity #317 (@smoia)

📝 Documentation

• Update badges in README and documentation #322 (@smoia)
• Update zenodo info #321 (@smoia)

🏠 Internal

• Setup auto release workflow #313 (@smoia)

Authors: 2

• Stefano Moia (@smoia)
• Vicente Ferrer (@vinferrer)

BIDS formatting of physiological recordings

v2.2.0 (Wed Oct 14 2020)

🚀 Enhancement

• Make trigger-based time-offset correction more generalisable (resample time before comparing it to trigger) #308 ([email protected])
• Format logger to make terminal (stdout) more human readable #312 (@vinferrer)
• Add (resampled) trigger to all output files #288 (@vinferrer)

🐛 Bug Fix

• Skip CI on all-contributors ([email protected])
• Explicitly ignore rc files and github folder ([email protected])
• Add autorc ([email protected])
• Add auto badge to documentation ([email protected])
• Add auto badge ([email protected])
• Add workflow for auto publishing ([email protected])
• Change build shield from Travis to CircleCI #297 (@eurunuela)
• Fix linting errors #294 (@eurunuela)
• Start of sampling time is now the same for all frequencies #283 (@vinferrer)
• Add travis wait command #284 (@eurunuela)
• Correct trigger channel indexing while reading AcqKnowledge files. #275 ([email protected])

⚠️ Pushed to master

• Merge branch 'int/auto' ([email protected])
• Update README.md ([email protected])
• Update ISSUE_TEMPLATE_MEETING.md ([email protected])
• Fix message shown when skipping integration test (@eurunuela)
• Update .travis.yml (@eurunuela)
• Update setup.cfg (@eurunuela)

📝 Documentation

• Update all-contributors #310 ([email protected])
• Update documentation to reflect change from Travis CI to CircleCI #290 (@eurunuela)

⚠️ Tests

• Add tests for exceptions #291 (@eurunuela)
• Add CircleCI for automatic testing and correct integration test parameters #286 (@eurunuela)
• Switch from Travis to CircleCI for automatic testing #285 (@eurunuela)
• Add integration test for the multi run pipeline #266 (@eurunuela)

🏠 Internal

• Refactor txt.py chtrig parameter to improve code readability #305 (@vinferrer)

🖋️ Outreach

• Add link to Google Calendar #302 (@eurunuela)

Authors: 3

• Eneko Uruñuela (@eurunuela)
• Stefano Moia (@smoia)
• Vicente Ferrer (@vinferrer)

BIDS formatting of physiological recordings

v2.1.0 (Tue Jun 23 2020)

🎉 This release contains work from new contributors! 🎉

Thanks for all your work!

❤️ Taylor Salo (@tsalo)

❤️ François Lespinasse (@sangfrois)

🚀 Enhancement

• Add the possibility to split multi-run physiological recordings #206 (@sangfrois @smoia @rmarkello)
• Create folder code/conversion to store trigger and channel plots, yaml and heuristic files and the call.sh file #256 (@vinferrer @eurunuela)
• Add duecredit to handle citations #249 (@tsalo @smoia)
• Generate dataset_description.json and README.md when they do not exist and update the json file when the subject is missing #255 (@vinferrer)
• Create bids_ignore directory and redirect channels plot, trigger plot, logger output and subject log file to this directory #245 (@vinferrer @smoia)
• Generate participants.tsv if it doesn't exist or update it if subject is missing in the file #244 (@eurunuela)

🐛 Bug Fix

• Auto #236 (@smoia)
• Check branch in travisCI #235 (@smoia)

⚠️ Tests

• Change os path import and linter #260 (@smoia)
• Remove redundant integration tests #259 (@eurunuela)
• Add unit tests for participants_file and append_list_as_row #254 (@sangfrois @eurunuela)
• Update testing to use short files. #241 (@eurunuela)

🏠 Internal

• Automate python packaging #262 (@smoia)
• Add zenodo default to improve automatic release tracking #261 (@smoia)

Authors: 9

• Eneko Uruñuela (@eurunuela)
• François Lespinasse (@sangfrois)
• Rachael Stickland (@RayStick)
• Ross Markello (@rmarkello)
• Stefano Moia (@smoia)
• Taylor Salo (@tsalo)
• Vicente Ferrer (@vinferrer)

BIDS formatting of physiological recordings v2.0.0

v2.0.0 (Mon Jun 15 2020)

🎉 This release contains work from a new contributor! 🎉

Thank you, Molly Bright (@BrightMG), for all your work!

💥 Breaking Change

• Make heuristics a simple set of "if .. elif .. else" statements and use a dictionary instead of variables. #209 (@smoia)

🚀 Enhancement

• Add BIDS-compatible automatic reformatting of units of measure #222 (@vinferrer @smoia @eurunuela)
• Add getitem and eq methods to BlueprintInput for easier slicing and comparing #213 (@smoia)
• Improve code compliance to BIDS in BlueprintOputput #189 (@smoia)

🐛 Bug Fix

• Auto #236 (@smoia)
• Check branch in travisCI #235 (@smoia)
• Print float to max 4 decimal places #212 (@RayStick)
• Enh/bids units #224 (@smoia)
• Add issue templates #220 (@smoia)

⚠️ Pushed to master

• Update ISSUE_TEMPLATE_MEETING.md (@smoia)
• Update badges (@smoia)
• Invert Cesar & Vicente, reorganise badges (@smoia)
• Update heuristic.rst (@smoia)
• Add heuristic link (@smoia)
• Update card link (@smoia)
• Add card and mattermost channel for BrainWeb (@smoia)
• Add card for BrainWeb (@smoia)
• Updates for the BrainWeb (@smoia)

📝 Documentation

• Update reference API #231 (@rmarkello)
• Add "Why BIDS?" page to the documentation #229 (@rmarkello)
• Create LICENSE #3 (@smoia)
• Fix typos on "Best Practices for Phys Data Collection" #200 (@kristinazvolanek)
• Fix formatting on "Best Practices for Phys Data Collection" #198 (@kristinazvolanek)
• Update trigger detection tutorial #191 (@vinferrer @RayStick @smoia)
• Add section on "Best Practices for Phys Data Collection" #177 (@AyyagariA @BrightMG)
• Update viz.py docstrings and Inputs #193 (@vinferrer)
• Create README.md #4 (@smoia)

⚠️ Tests

• Fix azure pipelines non-failure bug #223 (@rmarkello)
• Add Azure Pipelines for Windows CI testing #208 (@rmarkello)

🏠 Internal

• Move bids-related functions to dedicated file #234 (@smoia)
• Remove bioread form required dependencies, ease extra modules installation #214 (@smoia @RayStick)
• Reordering of import statements in the entire phys2bids project #195 (@eurunuela)

Authors: 8

• Apoorva Ayyagari (@AyyagariA)
• Eneko Uruñuela (@eurunuela)
• Kristina Zvolanek (@kristinazvolanek)
• Molly Bright (@BrightMG)
• Rachael Stickland (@RayStick)
• Ross Markello (@rmarkello)
• Stefano Moia (@smoia)
• Vicente Ferrer (@vinferrer)

BIDS formatting of physiological recordings v1.3.0-beta

New features:

• Now support AcqKnowledge files in txt format.
• Features a documentation in readthedocs

BIDS formatting of physiological recordings

v1.2.0-beta

Update README.md

phys2bids: quasi-automatic BIDS formatting of physiological recordings

Now supports LabChart files through .txt files with header

phys2bids: automatic BIDS formatting of physiological recordings

Merge pull request #52 from vinferrer/master

 Solving issue #51