Don't run old phase tests

Author: smoia

phys2denoise/tests/test_metrics_cardiac.py

@@ -20,62 +20,62 @@ def test_crf_smoke():
     assert len(crf_arr) == pred_len
 
 
-def test_cardiac_phase_smoke():
-    """Basic smoke test for cardiac phase calculation."""
-    t_r = 1.0
-    n_scans = 200
-    sample_rate = 1 / 0.01
-    slice_timings = np.linspace(0, t_r, 22)[1:-1]
-    peaks = np.array([0.534, 0.577, 10.45, 20.66, 50.55, 90.22])
-    data = np.zeros(peaks.shape)
-    card_phase = cardiac.cardiac_phase(
-        data,
-        peaks=peaks,
-        fs=sample_rate,
-        slice_timings=slice_timings,
-        n_scans=n_scans,
-        t_r=t_r,
-    )
-    assert card_phase.ndim == 2
-    assert card_phase.shape == (n_scans, slice_timings.size)
+# def test_cardiac_phase_smoke():
+#     """Basic smoke test for cardiac phase calculation."""
+#     t_r = 1.0
+#     n_scans = 200
+#     sample_rate = 1 / 0.01
+#     slice_timings = np.linspace(0, t_r, 22)[1:-1]
+#     peaks = np.array([0.534, 0.577, 10.45, 20.66, 50.55, 90.22])
+#     data = np.zeros(peaks.shape)
+#     card_phase = cardiac.cardiac_phase(
+#         data,
+#         peaks=peaks,
+#         fs=sample_rate,
+#         slice_timings=slice_timings,
+#         n_scans=n_scans,
+#         t_r=t_r,
+#     )
+#     assert card_phase.ndim == 2
+#     assert card_phase.shape == (n_scans, slice_timings.size)
 
 
-def test_cardiac_phase_smoke_physio_obj():
-    """Basic smoke test for cardiac phase calculation."""
-    t_r = 1.0
-    n_scans = 200
-    sample_rate = 1 / 0.01
-    slice_timings = np.linspace(0, t_r, 22)[1:-1]
-    peaks = np.array([0.534, 0.577, 10.45, 20.66, 50.55, 90.22])
-    data = np.zeros(peaks.shape)
-    phys = physio.Physio(data, sample_rate, physio_type="cardiac")
-    phys._metadata["peaks"] = peaks
+# def test_cardiac_phase_smoke_physio_obj():
+#     """Basic smoke test for cardiac phase calculation."""
+#     t_r = 1.0
+#     n_scans = 200
+#     sample_rate = 1 / 0.01
+#     slice_timings = np.linspace(0, t_r, 22)[1:-1]
+#     peaks = np.array([0.534, 0.577, 10.45, 20.66, 50.55, 90.22])
+#     data = np.zeros(peaks.shape)
+#     phys = physio.Physio(data, sample_rate, physio_type="cardiac")
+#     phys._metadata["peaks"] = peaks
 
-    # Test where the physio object is returned
-    phys = cardiac.cardiac_phase(
-        phys,
-        slice_timings=slice_timings,
-        n_scans=n_scans,
-        t_r=t_r,
-    )
+#     # Test where the physio object is returned
+#     phys = cardiac.cardiac_phase(
+#         phys,
+#         slice_timings=slice_timings,
+#         n_scans=n_scans,
+#         t_r=t_r,
+#     )
 
-    assert phys.history[0][0] == "phys2denoise.metrics.cardiac.cardiac_phase"
-    assert phys.computed_metrics["cardiac_phase"].ndim == 2
-    assert phys.computed_metrics["cardiac_phase"].shape == (
-        n_scans,
-        slice_timings.size,
-    )
-    assert phys.computed_metrics["cardiac_phase"].args["slice_timings"] is not None
-    assert phys.computed_metrics["cardiac_phase"].args["n_scans"] is not None
-    assert phys.computed_metrics["cardiac_phase"].args["t_r"] is not None
+#     assert phys.history[0][0] == "phys2denoise.metrics.cardiac.cardiac_phase"
+#     assert phys.computed_metrics["cardiac_phase"].ndim == 2
+#     assert phys.computed_metrics["cardiac_phase"].shape == (
+#         n_scans,
+#         slice_timings.size,
+#     )
+#     assert phys.computed_metrics["cardiac_phase"].args["slice_timings"] is not None
+#     assert phys.computed_metrics["cardiac_phase"].args["n_scans"] is not None
+#     assert phys.computed_metrics["cardiac_phase"].args["t_r"] is not None
 
-    # Test where the metric is returned
-    card_phase = cardiac.cardiac_phase(
-        phys,
-        slice_timings=slice_timings,
-        n_scans=n_scans,
-        t_r=t_r,
-        return_physio=False,
-    )
-    assert card_phase.ndim == 2
-    assert card_phase.shape == (n_scans, slice_timings.size)
+#     # Test where the metric is returned
+#     card_phase = cardiac.cardiac_phase(
+#         phys,
+#         slice_timings=slice_timings,
+#         n_scans=n_scans,
+#         t_r=t_r,
+#         return_physio=False,
+#     )
+#     assert card_phase.ndim == 2
+#     assert card_phase.shape == (n_scans, slice_timings.size)

phys2denoise/tests/test_metrics_chest_belt.py

@@ -22,23 +22,23 @@ def test_rrf_smoke():
     assert rrf_arr.size == pred_len
 
 
-def test_respiratory_phase_smoke():
-    """Basic smoke test for respiratory phase calculation."""
-    t_r = 1.0
-    n_scans = 200
-    sample_rate = 1 / 0.01
-    slice_timings = np.linspace(0, t_r, 22)[1:-1]
-    n_samples = int(np.rint((n_scans * t_r) * sample_rate))
-    resp = np.random.normal(size=n_samples)
-    resp_phase = chest_belt.respiratory_phase(
-        resp,
-        fs=sample_rate,
-        slice_timings=slice_timings,
-        n_scans=n_scans,
-        t_r=t_r,
-    )
-    assert resp_phase.ndim == 2
-    assert resp_phase.shape == (n_scans, slice_timings.size)
+# def test_respiratory_phase_smoke():
+#     """Basic smoke test for respiratory phase calculation."""
+#     t_r = 1.0
+#     n_scans = 200
+#     sample_rate = 1 / 0.01
+#     slice_timings = np.linspace(0, t_r, 22)[1:-1]
+#     n_samples = int(np.rint((n_scans * t_r) * sample_rate))
+#     resp = np.random.normal(size=n_samples)
+#     resp_phase = chest_belt.respiratory_phase(
+#         resp,
+#         fs=sample_rate,
+#         slice_timings=slice_timings,
+#         n_scans=n_scans,
+#         t_r=t_r,
+#     )
+#     assert resp_phase.ndim == 2
+#     assert resp_phase.shape == (n_scans, slice_timings.size)
 
 
 def test_respiratory_pattern_variability_smoke():