Update prep4phys

.all-contributorsrc

@@ -22,6 +22,31 @@
         "infra"
       ]
     },
+    {
+      "login": "afni-dglen",
+      "name": "Daniel Glen",
+      "avatar_url": "https://avatars.githubusercontent.com/u/10454715?v=4",
+      "profile": "https://github.com/afni-dglen",
+      "contributions": [
+        "bug",
+        "code",
+        "maintenance"
+      ]
+    },
+    {
+      "login": "maestroque",
+      "name": "George Kikas",
+      "avatar_url": "https://avatars.githubusercontent.com/u/74024609?v=4",
+      "profile": "https://github.com/maestroque",
+      "contributions": [
+        "bug",
+        "code",
+        "ideas",
+        "infra",
+        "review",
+        "test"
+      ]
+    },
     {
       "login": "rmarkello",
       "name": "Ross Markello",
@@ -34,24 +59,49 @@
         "ideas",
         "infra",
         "maintenance",
+        "mentoring",
         "projectManagement",
         "review",
         "test",
         "tutorial"
       ]
     },
+    {
+      "login": "m-miedema",
+      "name": "m-miedema",
+      "avatar_url": "https://avatars.githubusercontent.com/u/39968233?v=4",
+      "profile": "https://github.com/m-miedema",
+      "contributions": [
+        "review",
+        "mentoring"
+      ]
+    },
     {
       "login": "smoia",
       "name": "Stefano Moia",
       "avatar_url": "https://avatars.githubusercontent.com/u/35300580?v=4",
       "profile": "https://github.com/smoia",
       "contributions": [
         "review",
+        "bug",
         "code",
+        "ideas",
         "infra",
+        "mentoring",
         "projectManagement"
       ]
     },
+    {
+      "login": "me-pic",
+      "name": "Marie-Eve Picard",
+      "avatar_url": "https://avatars.githubusercontent.com/u/77584086?v=4",
+      "profile": "https://github.com/me-pic",
+      "contributions": [
+        "doc",
+        "review",
+        "mentoring"
+      ]
+    },
     {
       "login": "tsalo",
       "name": "Taylor Salo",
@@ -61,6 +111,17 @@
         "infra"
       ]
     },
+    {
+      "login": "RayStick",
+      "name": "Rachael Stickland",
+      "avatar_url": "https://avatars.githubusercontent.com/u/50215726?v=4",
+      "profile": "https://github.com/RayStick",
+      "contributions": [
+        "doc",
+        "infra",
+        "test"
+      ]
+    },
     {
       "login": "mixue-t",
       "name": "Mi-Xue Tan",

.pre-commit-config.yaml

@@ -11,15 +11,15 @@ repos:
     -   id: check-case-conflict
     -   id: check-merge-conflict
 -   repo: https://github.com/psf/black
-    rev: 24.4.2
+    rev: 24.8.0
     hooks:
     -   id: black
 -   repo: https://github.com/pycqa/isort
     rev: 5.13.2
     hooks:
     -   id: isort
 -   repo: https://github.com/pycqa/flake8
-    rev: 7.1.0
+    rev: 7.1.1
     hooks:
     -   id: flake8
 -   repo: https://github.com/pycqa/pydocstyle

.zenodo.json

@@ -3,19 +3,212 @@
     "title": "physiopy/peakdet: A python toolbox for reproducible physiological data analysis",
     "upload_type": "software",
     "creators": [
-        {
-            "affiliation": "McGill University",
-            "name": "Elizabeth DuPre"
-        },
-        {
-            "affiliation": "McGill University",
-            "name": "Ross Markello"
-        },
-        {
-            "orcid": "0000-0002-2553-3327",
-            "affiliation": "BCBL - Basque Center on Cognition, Brain and Language",
-            "name": "Stefano Moia"
-        }
+          {
+            "affiliations": [
+              {
+                "name": "Stanford University"
+              }
+            ],
+            "person_or_org": {
+              "family_name": "DuPre",
+              "given_name": "Elizabeth",
+              "identifiers": [
+                {
+                  "identifier": "0000-0003-1358-196X",
+                  "scheme": "orcid"
+                }
+              ],
+              "name": "DuPre, Elizabeth",
+              "type": "personal"
+            }
+          },
+          {
+            "affiliations": [
+              {
+                "name": "National Institute of Mental Health"
+              }
+            ],
+            "person_or_org": {
+              "family_name": "Glen",
+              "given_name": "Daniel",
+              "identifiers": [
+                {
+                  "identifier": "0000-0001-8456-5647",
+                  "scheme": "orcid"
+                }
+              ],
+              "name": "Glen, Daniel",
+              "type": "personal"
+            }
+          },
+          {
+            "affiliations": [
+              {
+                "id": "02j61yw88",
+                "name": "Aristotle University of Thessaloniki"
+              }
+            ],
+            "person_or_org": {
+              "family_name": "Kikas",
+              "given_name": "Georgios",
+              "name": "Kikas, Georgios",
+              "type": "personal"
+            }
+          },
+          {
+            "affiliations": [
+              {
+                "name": "McGill University"
+              }
+            ],
+            "person_or_org": {
+              "family_name": "Markello",
+              "given_name": "Ross",
+              "identifiers": [
+                {
+                  "identifier": "0000-0003-1057-1336",
+                  "scheme": "orcid"
+                }
+              ],
+              "name": "Markello, Ross",
+              "type": "personal"
+            }
+          },
+          {
+            "affiliations": [
+              {
+                "id": "01pxwe438",
+                "name": "McGill University"
+              }
+            ],
+            "person_or_org": {
+              "family_name": "Miedema",
+              "given_name": "Mary",
+              "identifiers": [
+                {
+                  "identifier": "0009-0008-3263-731X",
+                  "scheme": "orcid"
+                }
+              ],
+              "name": "Miedema, Mary",
+              "type": "personal"
+            }
+          },
+          {
+            "affiliations": [
+              {
+                "name": "Maastricht University"
+              }
+            ],
+            "person_or_org": {
+              "family_name": "Moia",
+              "given_name": "Stefano",
+              "identifiers": [
+                {
+                  "identifier": "0000-0002-2553-3327",
+                  "scheme": "orcid"
+                }
+              ],
+              "name": "Moia, Stefano",
+              "type": "personal"
+            }
+          },
+          {
+            "affiliations": [
+              {
+                "name": "Universit\u00e9 de Montr\u00e9al"
+              }
+            ],
+            "person_or_org": {
+              "family_name": "Picard",
+              "given_name": "Marie-\u00c8ve",
+              "identifiers": [
+                {
+                  "identifier": "0000-0002-4316-2830",
+                  "scheme": "orcid"
+                }
+              ],
+              "name": "Picard, Marie-\u00c8ve",
+              "type": "personal"
+            }
+          },
+          {
+            "affiliations": [
+              {
+                "name": "University of Pennsylvania"
+              }
+            ],
+            "person_or_org": {
+              "family_name": "Salo",
+              "given_name": "Taylor",
+              "identifiers": [
+                {
+                  "identifier": "0000-0001-9813-3167",
+                  "scheme": "orcid"
+                }
+              ],
+              "name": "Salo, Taylor",
+              "type": "personal"
+            }
+          },
+          {
+            "affiliations": [
+              {
+                "name": "The Alan Turing Institute"
+              }
+            ],
+            "person_or_org": {
+              "family_name": "Stickland",
+              "given_name": "Rachael",
+              "identifiers": [
+                {
+                  "identifier": "0000-0003-3398-4272",
+                  "scheme": "orcid"
+                }
+              ],
+              "name": "Stickland, Rachael",
+              "type": "personal"
+            }
+          },
+          {
+            "affiliations": [
+              {
+                "name": "University of Geneva"
+              }
+            ],
+            "person_or_org": {
+              "family_name": "Tan",
+              "given_name": "Mi Xue",
+              "identifiers": [
+                {
+                  "identifier": "0000-0002-8214-2146",
+                  "scheme": "orcid"
+                }
+              ],
+              "name": "Tan, Mi Xue",
+              "type": "personal"
+            }
+          },
+          {
+            "affiliations": [
+              {
+                "id": "01a28zg77",
+                "name": "Basque Center on Cognition, Brain and Language"
+              }
+            ],
+            "person_or_org": {
+              "family_name": "Uru\u00f1uela",
+              "given_name": "Eneko",
+              "identifiers": [
+                {
+                  "identifier": "0000-0001-6849-9088",
+                  "scheme": "orcid"
+                }
+              ],
+              "name": "Uru\u00f1uela, Eneko",
+              "type": "personal"
+            }
+          }
     ],
     "access_right": "open"
 }

CHANGELOG.md

@@ -1,3 +1,45 @@
+# 0.5.2 (Wed Oct 09 2024)
+
+#### 🐛 Bug Fix
+
+- Make sure peak detection works with negative signals [#84](https://github.com/physiopy/peakdet/pull/84) ([@smoia](https://github.com/smoia))
+
+#### 🏠 Internal
+
+- [pre-commit.ci] pre-commit autoupdate [#75](https://github.com/physiopy/peakdet/pull/75) ([@pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
+
+#### Authors: 2
+
+- [@pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot])
+- Stefano Moia ([@smoia](https://github.com/smoia))
+
+---
+
+# 0.5.1 (Tue Aug 27 2024)
+
+:tada: This release contains work from a new contributor! :tada:
+
+Thank you, Marie-Eve Picard ([@me-pic](https://github.com/me-pic)), for all your work!
+
+#### 🐛 Bug Fix
+
+- Fix type errors in exporting history after manually adding peaks [#79](https://github.com/physiopy/peakdet/pull/79) ([@smoia](https://github.com/smoia))
+
+#### 📝 Documentation
+
+- Update contributors [#82](https://github.com/physiopy/peakdet/pull/82) ([@smoia](https://github.com/smoia))
+
+#### 🏠 Internal
+
+- Add contribution [#81](https://github.com/physiopy/peakdet/pull/81) ([@me-pic](https://github.com/me-pic))
+
+#### Authors: 2
+
+- Marie-Eve Picard ([@me-pic](https://github.com/me-pic))
+- Stefano Moia ([@smoia](https://github.com/smoia))
+
+---
+
 # 0.5.0 (Fri Jul 19 2024)
 
 #### 🚀 Enhancement