Deletion of stale content types raises ProgrammingError

[intellisense]

When there are stale content types to be deleted I am getting bellow error. I am not able to proceed with yes option. Any help? Thanks!

(venv) F:\Freelancer\company\project>fab manage:migrate,notifications
[localhost] local: python manage.py migrate notifications
Operations to perform:
  Apply all migrations: notifications
Running migrations:
  No migrations to apply.
The following content types are stale and need to be deleted:

    lp_settings | shortnotifications
    lp_settings | notification

Any objects related to these content types by a foreign key will also
be deleted. Are you sure you want to delete these content types?
If you're unsure, answer 'no'.

    Type 'yes' to continue, or 'no' to cancel: yes
Traceback (most recent call last):
  File "manage.py", line 10, in <module>
    execute_from_command_line(sys.argv)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\core\management\__init__.py", line 385, in execute_from_command_line
    utility.execute()
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\core\management\__init__.py", line 377, in execute
    self.fetch_command(subcommand).run_from_argv(self.argv)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\core\management\base.py", line 288, in run_from_argv
    self.execute(*args, **options.__dict__)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\core\management\base.py", line 338, in execute
    output = self.handle(*args, **options)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\core\management\commands\migrate.py", line 165, in handle
    emit_post_migrate_signal(created_models, self.verbosity, self.interactive, connection.alias)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\core\management\sql.py", line 268, in emit_post_migrate_signal
    using=db)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\dispatch\dispatcher.py", line 198, in send
    response = receiver(signal=self, sender=sender, **named)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\contrib\contenttypes\management.py", line 84, in update_contenttypes
    ct.delete()
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\db\models\base.py", line 739, in delete
    collector.delete()
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\db\models\deletion.py", line 262, in delete
    qs._raw_delete(using=self.using)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\db\models\query.py", line 569, in _raw_delete
    sql.DeleteQuery(self.model).delete_qs(self, using)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\db\models\sql\subqueries.py", line 85, in delete_qs
    self.get_compiler(using).execute_sql(NO_RESULTS)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\db\models\sql\compiler.py", line 787, in execute_sql
    cursor.execute(sql, params)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\db\backends\utils.py", line 81, in execute
    return super(CursorDebugWrapper, self).execute(sql, params)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\db\backends\utils.py", line 65, in execute
    return self.cursor.execute(sql, params)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\db\utils.py", line 94, in __exit__
    six.reraise(dj_exc_type, dj_exc_value, traceback)
  File "F:\Freelancer\company\project\venv\lib\site-packages\django\db\backends\utils.py", line 65, in execute
    return self.cursor.execute(sql, params)
django.db.utils.ProgrammingError: column notifications_noticesetting.scoping_content_type_id does not exist
LINE 1: DELETE FROM "notifications_noticesetting" WHERE "notificatio...
                                                        ^

[intellisense]

What is the proper way to upgrade from this commit to 3.0.0??