Jenkins Commit

Author: BrapiCoordinatorSelby

Specification/BrAPI-Core/Lists/README.md

@@ -821,9 +821,9 @@ Review the <a target="_blank" href="https://wiki.brapi.org/index.php/Search_Serv
 <tr> <th> Field </th> <th> Type </th> <th> Description </th> </tr> 
 <tr><td><span style="font-weight:bold;">commonCropNames</span></td><td>array[string]</td><td>The BrAPI Common Crop Name is the simple, generalized, widely accepted name of the organism being researched. It is most often used in multi-crop systems where digital resources need to be divided at a high level. Things like 'Maize', 'Wheat', and 'Rice' are examples of common crop names.  Use this parameter to only return results associated with the given crops.   Use `GET /commoncropnames` to find the list of available crops on a server.</td></tr>
 <tr><td><span style="font-weight:bold;">dateCreatedRangeEnd</span></td><td>string<br>(date-time)</td><td>Define the end for an interval of time and only include Lists that are created within this interval.</td></tr>
-<tr><td><span style="font-weight:bold;">dateCreatedRangeStart</span></td><td>string<br>(date-time)</td><td>Define the begining for an interval of time and only include Lists that are created within this interval.</td></tr>
+<tr><td><span style="font-weight:bold;">dateCreatedRangeStart</span></td><td>string<br>(date-time)</td><td>Define the beginning for an interval of time and only include Lists that are created within this interval.</td></tr>
 <tr><td><span style="font-weight:bold;">dateModifiedRangeEnd</span></td><td>string<br>(date-time)</td><td>Define the end for an interval of time and only include Lists that are modified within this interval.</td></tr>
-<tr><td><span style="font-weight:bold;">dateModifiedRangeStart</span></td><td>string<br>(date-time)</td><td>Define the begining for an interval of time and only include Lists that are modified within this interval.</td></tr>
+<tr><td><span style="font-weight:bold;">dateModifiedRangeStart</span></td><td>string<br>(date-time)</td><td>Define the beginning for an interval of time and only include Lists that are modified within this interval.</td></tr>
 <tr><td><span style="font-weight:bold;">externalReferenceIDs</span></td><td>array[string]</td><td>**Deprecated in v2.1** Please use `externalReferenceIds`. Github issue number #460  <br>List of external reference IDs. Could be a simple strings or a URIs. (use with `externalReferenceSources` parameter)</td></tr>
 <tr><td><span style="font-weight:bold;">externalReferenceIds</span></td><td>array[string]</td><td>List of external reference IDs. Could be a simple strings or a URIs. (use with `externalReferenceSources` parameter)</td></tr>
 <tr><td><span style="font-weight:bold;">externalReferenceSources</span></td><td>array[string]</td><td>List of identifiers for the source system or database of an external reference (use with `externalReferenceIDs` parameter)</td></tr>

Specification/BrAPI-Genotyping/AlleleMatrix/README.md

@@ -49,7 +49,7 @@ without having to download the entire genotype file.
     + preview (Optional, ) ... Default Value = false<br/>If 'preview' is set to true, then the server should return with the "dataMatrices" field as null or empty. All other data fields should be returned normally. This is intended to be a preview and give the client a sense of how large the matrix returned will be<br/>If 'preview' is set to false or not set (default), then the server should return all the matrix data as requested.
     + dataMatrixNames (Optional, ) ... "dataMatrixNames" is a comma seperated list of names (ie 'Genotype, Read Depth' etc). This list controls which data matrices are returned in the response.<br> This maps to a FORMAT field in the VCF file standard.
     + dataMatrixAbbreviations (Optional, ) ... "dataMatrixAbbreviations" is a comma seperated list of abbreviations (ie 'GT, RD' etc). This list controls which data matrices are returned in the response.<br> This maps to a FORMAT field in the VCF file standard.
-    + positionRange (Optional, ) ... The postion range to search<br/> Uses the format "contig:start-end" where "contig" is the chromosome or contig name, "start" is  the starting position of the range, and "end" is the ending position of the range<br> Example: CRHOM_1:12000-14000
+    + positionRange (Optional, ) ... The position range to search<br/> Uses the format "contig:start-end" where "contig" is the chromosome or contig name, "start" is  the starting position of the range, and "end" is the ending position of the range<br> Example: CRHOM_1:12000-14000
     + germplasmDbId (Optional, ) ... Use this parameter to only return results associated with the given `Germplasm` unique identifier. <br/>Use `GET /germplasm` to find the list of available `Germplasm` on a server.
     + germplasmName (Optional, ) ... Use this parameter to only return results associated with the given `Germplasm` by its human readable name. <br/>Use `GET /germplasm` to find the list of available `Germplasm` on a server.
     + germplasmPUI (Optional, ) ... Use this parameter to only return results associated with the given `Germplasm` by its global permanent unique identifier. <br/>Use `GET /germplasm` to find the list of available `Germplasm` on a server.

Specification/BrAPI-Genotyping/GenomeMaps/README.md

@@ -24,12 +24,12 @@ Get list of maps
 <tr> <th> Field </th> <th> Type </th> <th> Description </th> </tr> 
 <tr><td><span style="font-weight:bold;">commonCropName</span></td><td>string<br><span style="font-size: smaller; color: red;">(Required)</span></td><td>The common name of the `Crop`</td></tr>
 <tr><td><span style="font-weight:bold;">mapDbId</span></td><td>string<br><span style="font-size: smaller; color: red;">(Required)</span></td><td>The ID which uniquely identifies a `GenomeMap`</td></tr>
+<tr><td><span style="font-weight:bold;">mapName</span></td><td>string<br><span style="font-size: smaller; color: red;">(Required)</span></td><td>A human readable name for a `GenomeMap`</td></tr>
 <tr><td><span style="font-weight:bold;">type</span></td><td>string<br><span style="font-size: smaller; color: red;">(Required)</span></td><td>The type of map this represents, usually "Genetic" or "Physical"</td></tr>
 <tr><td><span style="font-weight:bold;">additionalInfo</span></td><td>object</td><td>A free space containing any additional information related to a particular object. A data source may provide any JSON object, unrestricted by the BrAPI specification.</td></tr>
 <tr><td><span style="font-weight:bold;">comments</span></td><td>string</td><td>Additional comments about a `GenomeMap`</td></tr>
 <tr><td><span style="font-weight:bold;">documentationURL</span></td><td>string<br>(uri)</td><td>A URL to the human readable documentation of an object</td></tr>
 <tr><td><span style="font-weight:bold;">linkageGroupCount</span></td><td>integer</td><td>The number of linkage groups present in a `GenomeMap`</td></tr>
-<tr><td><span style="font-weight:bold;">mapName</span></td><td>string</td><td>A human readable name for a `GenomeMap`</td></tr>
 <tr><td><span style="font-weight:bold;">mapPUI</span></td><td>string</td><td>The DOI or other permanent identifier for a `GenomeMap`</td></tr>
 <tr><td><span style="font-weight:bold;">markerCount</span></td><td>integer</td><td>The number of markers present in a `GenomeMap`</td></tr>
 <tr><td><span style="font-weight:bold;">publishedDate</span></td><td>string<br>(date-time)</td><td>The date this `GenomeMap` was published</td></tr>
@@ -129,12 +129,12 @@ Provides the number of markers on each linkageGroup and the max position on the
 <tr> <th> Field </th> <th> Type </th> <th> Description </th> </tr> 
 <tr><td><span style="font-weight:bold;">commonCropName</span></td><td>string<br><span style="font-size: smaller; color: red;">(Required)</span></td><td>The common name of the `Crop`</td></tr>
 <tr><td><span style="font-weight:bold;">mapDbId</span></td><td>string<br><span style="font-size: smaller; color: red;">(Required)</span></td><td>The ID which uniquely identifies a `GenomeMap`</td></tr>
+<tr><td><span style="font-weight:bold;">mapName</span></td><td>string<br><span style="font-size: smaller; color: red;">(Required)</span></td><td>A human readable name for a `GenomeMap`</td></tr>
 <tr><td><span style="font-weight:bold;">type</span></td><td>string<br><span style="font-size: smaller; color: red;">(Required)</span></td><td>The type of map this represents, usually "Genetic" or "Physical"</td></tr>
 <tr><td><span style="font-weight:bold;">additionalInfo</span></td><td>object</td><td>A free space containing any additional information related to a particular object. A data source may provide any JSON object, unrestricted by the BrAPI specification.</td></tr>
 <tr><td><span style="font-weight:bold;">comments</span></td><td>string</td><td>Additional comments about a `GenomeMap`</td></tr>
 <tr><td><span style="font-weight:bold;">documentationURL</span></td><td>string<br>(uri)</td><td>A URL to the human readable documentation of an object</td></tr>
 <tr><td><span style="font-weight:bold;">linkageGroupCount</span></td><td>integer</td><td>The number of linkage groups present in a `GenomeMap`</td></tr>
-<tr><td><span style="font-weight:bold;">mapName</span></td><td>string</td><td>A human readable name for a `GenomeMap`</td></tr>
 <tr><td><span style="font-weight:bold;">mapPUI</span></td><td>string</td><td>The DOI or other permanent identifier for a `GenomeMap`</td></tr>
 <tr><td><span style="font-weight:bold;">markerCount</span></td><td>integer</td><td>The number of markers present in a `GenomeMap`</td></tr>
 <tr><td><span style="font-weight:bold;">publishedDate</span></td><td>string<br>(date-time)</td><td>The date this `GenomeMap` was published</td></tr>