Bump version to 0.2.0

Author: zongyanliu

README.md

@@ -2,7 +2,7 @@
 
 # GeneCAD: Plant Genome Annotation with a DNA Foundation Model
 
-![](https://img.shields.io/badge/version-0.1.0-blue)
+![](https://img.shields.io/badge/version-0.2.0-blue)
 [![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
 [![CI](https://github.com/plantcad/genecad/actions/workflows/ci.yaml/badge.svg)](https://github.com/plantcad/genecad/actions/workflows/ci.yaml)
 [![bioRxiv](https://img.shields.io/badge/bioRxiv-10.1101/2025.10.31.685877-b31b1b.svg)](https://doi.org/10.1101/2025.10.31.685877)
@@ -1304,19 +1304,19 @@ If you use GeneCAD in your research, please cite:
 ```bash
 # Build the image (requires Linux with Docker and NVIDIA drivers)
 sudo usermod -aG docker ubuntu && newgrp docker
-docker build --progress=plain --no-cache -t genecad:v0.1.0 .
+docker build --progress=plain --no-cache -t genecad:v0.2.0 .
 
 # Test the build — runs the full pipeline on the Arabidopsis example
-docker run --rm --gpus all -v $(pwd):/workspace -w /workspace genecad:v0.1.0 \
+docker run --rm --gpus all -v $(pwd):/workspace -w /workspace genecad:v0.2.0 \
   bash predict.sh
 
 # Publish to GitHub Container Registry
 # Requires a personal access token with "write:packages" stored in GHCR_TOKEN
 IMAGE=ghcr.io/plantcad/genecad_v1
-docker tag genecad:v0.1.0 $IMAGE:v0.1.0
-docker tag genecad:v0.1.0 $IMAGE:latest
+docker tag genecad:v0.2.0 $IMAGE:v0.2.0
+docker tag genecad:v0.2.0 $IMAGE:latest
 echo $GHCR_TOKEN | docker login ghcr.io -u YOUR_GITHUB_USERNAME --password-stdin
-docker push $IMAGE:v0.1.0
+docker push $IMAGE:v0.2.0
 docker push $IMAGE:latest
 ```
 

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "genecad"
-version = "0.1.0"
+version = "0.2.0"
 description = "GeneCAD: A long-context genome annotation model built on PlantCAD2"
 readme = "README.md"
 requires-python = ">=3.12,<3.13"

scripts/install_release.sh

@@ -5,10 +5,10 @@ set -euo pipefail
 # Usage:
 #   bash scripts/install_release.sh
 # Optional env vars:
-#   GENECAD_VERSION=0.1.0
+#   GENECAD_VERSION=0.2.0
 #   PYTORCH_CUDA_INDEX=https://download.pytorch.org/whl/cu128
 
-GENECAD_VERSION="${GENECAD_VERSION:-0.1.0}"
+GENECAD_VERSION="${GENECAD_VERSION:-0.2.0}"
 PYTORCH_CUDA_INDEX="${PYTORCH_CUDA_INDEX:-https://download.pytorch.org/whl/cu128}"
 WHEEL_URL="https://github.com/plantcad/genecad/releases/download/v${GENECAD_VERSION}/genecad-${GENECAD_VERSION}-py3-none-any.whl"