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Merge pull request #84 from pnnl/hotfix/hyp-192
Hotfix/hyp 192
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3 files changed

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docs/source/conf.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -19,7 +19,7 @@
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import os
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import shlex
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22-
__version__ = "1.2.2"
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__version__ = "1.2.3"
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# If extensions (or modules to document with autodoc) are in another directory,

hypernetx/reports/descriptive_stats.py

Lines changed: 55 additions & 54 deletions
Original file line numberDiff line numberDiff line change
@@ -354,59 +354,60 @@ def dist_stats(H):
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dist_stats : dict
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Dictionary which keeps track of each of the above items (e.g., basic['nrows'] = the number of nodes in H)
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"""
357-
stats = H.state_dict.get("dist_stats", None)
358-
if stats is not None:
359-
return H.state_dict["dist_stats"]
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else:
361-
cstats = ["min", "max", "mean", "median", "std"]
362-
basic = dict()
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if H.isstatic:
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stats = H.state_dict.get("dist_stats", None)
359+
if stats is not None:
360+
return H.state_dict["dist_stats"]
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362+
cstats = ["min", "max", "mean", "median", "std"]
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basic = dict()
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# Number of rows (nodes), columns (edges), and aspect ratio
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basic["nrows"] = len(H.nodes)
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basic["ncols"] = len(H.edges)
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basic["aspect ratio"] = basic["nrows"] / basic["ncols"]
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# Number of cells and density
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M = H.incidence_matrix(index=False)
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basic["ncells"] = M.nnz
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basic["density"] = basic["ncells"] / (basic["nrows"] * basic["ncols"])
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# Node degree distribution
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basic["node degree list"] = sorted(degree_dist(H), reverse=True)
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basic["node degree centrality stats"] = dict(
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zip(cstats, centrality_stats(basic["node degree list"]))
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)
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basic["node degree hist"] = Counter(basic["node degree list"])
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basic["max node degree"] = max(basic["node degree list"])
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# Edge size distribution
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basic["edge size list"] = sorted(H.edge_size_dist(), reverse=True)
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basic["edge size centrality stats"] = dict(
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zip(cstats, centrality_stats(basic["edge size list"]))
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)
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basic["edge size hist"] = Counter(basic["edge size list"])
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basic["max edge size"] = max(basic["edge size hist"])
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# Component size distribution (nodes)
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basic["comp nodes list"] = sorted(s_comp_dist(H, edges=False), reverse=True)
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basic["comp nodes hist"] = Counter(basic["comp nodes list"])
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basic["comp nodes centrality stats"] = dict(
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zip(cstats, centrality_stats(basic["comp nodes list"]))
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)
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# Component size distribution (edges)
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basic["comp edges list"] = sorted(s_comp_dist(H, edges=True), reverse=True)
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basic["comp edges hist"] = Counter(basic["comp edges list"])
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basic["comp edges centrality stats"] = dict(
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zip(cstats, centrality_stats(basic["comp edges list"]))
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)
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364-
# Number of rows (nodes), columns (edges), and aspect ratio
365-
basic["nrows"] = len(H.nodes)
366-
basic["ncols"] = len(H.edges)
367-
basic["aspect ratio"] = basic["nrows"] / basic["ncols"]
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# Number of components
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basic["num comps"] = len(basic["comp nodes list"])
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369-
# Number of cells and density
370-
M = H.incidence_matrix(index=False)
371-
basic["ncells"] = M.nnz
372-
basic["density"] = basic["ncells"] / (basic["nrows"] * basic["ncols"])
373-
374-
# Node degree distribution
375-
basic["node degree list"] = sorted(degree_dist(H), reverse=True)
376-
basic["node degree centrality stats"] = dict(
377-
zip(cstats, centrality_stats(basic["node degree list"]))
378-
)
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basic["node degree hist"] = Counter(basic["node degree list"])
380-
basic["max node degree"] = max(basic["node degree list"])
381-
382-
# Edge size distribution
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basic["edge size list"] = sorted(H.edge_size_dist(), reverse=True)
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basic["edge size centrality stats"] = dict(
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zip(cstats, centrality_stats(basic["edge size list"]))
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)
387-
basic["edge size hist"] = Counter(basic["edge size list"])
388-
basic["max edge size"] = max(basic["edge size hist"])
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390-
# Component size distribution (nodes)
391-
basic["comp nodes list"] = sorted(s_comp_dist(H, edges=False), reverse=True)
392-
basic["comp nodes hist"] = Counter(basic["comp nodes list"])
393-
basic["comp nodes centrality stats"] = dict(
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zip(cstats, centrality_stats(basic["comp nodes list"]))
395-
)
396-
397-
# Component size distribution (edges)
398-
basic["comp edges list"] = sorted(s_comp_dist(H, edges=True), reverse=True)
399-
basic["comp edges hist"] = Counter(basic["comp edges list"])
400-
basic["comp edges centrality stats"] = dict(
401-
zip(cstats, centrality_stats(basic["comp edges list"]))
402-
)
403-
404-
# Number of components
405-
basic["num comps"] = len(basic["comp nodes list"])
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407-
# # Diameters
408-
# basic['s edge diam list'] = s_edge_diameter_dist(H)
409-
# basic['s node diam list'] = s_node_diameter_dist(H)
410-
if H.isstatic:
411-
H.set_state(dist_stats=basic)
412-
return basic
408+
# # Diameters
409+
# basic['s edge diam list'] = s_edge_diameter_dist(H)
410+
# basic['s node diam list'] = s_node_diameter_dist(H)
411+
if H.isstatic:
412+
H.set_state(dist_stats=basic)
413+
return basic

setup.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
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from setuptools import setup
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import sys
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4-
__version__ = "1.2.2"
4+
__version__ = "1.2.3"
55

66
if sys.version_info < (3, 7):
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sys.exit("HyperNetX requires Python 3.7 or later.")

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