- Same as previous version.
- Same as previous version.
- Add fledge-bump workflow
- Add fledge-tag-on-merge workflow
- Depends on R >= 4.0.
- When
bound = TRUErhat()now also returns rhat values for separate analyses. - When
bound = TRUEandas_df = TRUErhat()now returns a data.frame with the rhat values for the separate and combined analyses.
- Update testing to testthat 3.
- Added
fill_na()formcarray,mcmcarrayandmcmcr. - Fixed
as.mcmcarray.mcmc()(andas.mcmcr.mcmc()) so now returns anmcmcarray(andmcmcr) object with no terms.
- Added
tidy.mcmcr().simplify = FALSEargument tocoef()andtidy()and soft-deprecated if notTRUE....optional arguments forfun = medianargument toestimates().
- Moved
as_nlists.mcmc.list()to nlist package.
- Added
as_mcmc_list.mcmr(). - Moved the following to
nlistas_nlist.mcmc()andas_nlist.mcmc.list()as_nlists.mcmc()as.term.mcmc()andas.term.mcmc.list()bind_iterations.mcmc()andbind_iterations.mcmc.list()collapse_chains.default()andcollapse_chains.mcmc.list()
-
Changed
npdims.mcmc.list()to return character vector (as opposed to list)collapse_chains.mcmc.list()to return an mcmc.list object with one chain (as opposed to an mcmc object)- first argument of
estimates()fromobjecttox. scalar_only = FALSEargument ofpars()toscalar = NA.estimates()so now checks fun returns scalar numeric.
-
Soft-deprecated
pvalue()forextras::pvalue().zero()forfill_all().check_mcmcarray()andcheck_mcmcr()forchk_mcmcarray()andchk_mcmcr().iterationsargument withitersinsubset().parametersargument withparsinsubset().
-
Added
vld_()andchk_()functions for mcmcarray and mcmcr objects.scalar = NULLargument topars()andnpars().na_rm = NAargument toesr()andrhat().- missing
as_df = FALSEarg toesr()for mcarray, mcmc and mcmc.list. - coercion to and from nlists objects for mcmcr, mcmc.list and mcmc objects.
-
Moved
- handling of terms to term package.
- generic definitions of
nchains(),niters(),collapse_chains()andsplit_chains()etc to universals package.
- Added
check_mcmcr()andcheck_mcmcarray(). - Fixed by and as_df arguments in
converged(). - Added more tests.
- Removed
as.mcmc.mcmc.list(),thin.mcmc()andthin.mcmc.list()as now defined by coda. - No longer export
as.mcmc.list.mcarray()as clashes with rjags version.
- Added
mcmc_aperm()function to transpose parameter dimensions. - Added
npdims()function to get number of parameter dimensions. - Added
by = TRUEargument tomcmc_map()function. - Removed tibble package from suggests.
rhat()now returns minimum of 1.- Defined
subset()andparameters()for mcmcrs object. - Added
bound = FALSEargument torhat.mcmcrs()andconverged.mcmcrs()functions.
- Moved graphics, coef, tibble packages from imports to suggests.
- Replaced internal
error()witherr::err().
- Allowed NAs in values to calculate pvalues.
- Updated to not use length argument in checkr as deprecated.
- Released to CRAN.