Final tweaks for 0.95 release.

A couple more corrections in the manual, and minor changes
to the build file (executable jar file and correct upload path).

Author: pont-us

build.xml

@@ -81,7 +81,8 @@
                 prefix="${ant.project.name}.app"
                 filemode="755"
                 includes="Contents/MacOS/JavaApplicationStub"/>
-            <zipfileset file="${basedir}/dist/single-jar/${ant.project.name}.jar" />
+            <zipfileset file="${basedir}/dist/single-jar/${ant.project.name}.jar"
+                filemode="755"/>
             <zipfileset dir="${basedir}/manual" prefix="Manual">
                 <include name="manual.pdf" />
                 <include name="manual.html" />
@@ -92,7 +93,7 @@
         </zip>
     </target>
 
-    <target name="upload-release" depends="create-release"
+    <target name="upload-release"
         description="Uploads an archive of PuffinPlot binaries and documentation">
     <taskdef classname="net.bluecow.googlecode.ant.GoogleCodeUploadTask"
         classpath="libs/ant-googlecode.jar" name="gcupload"/>
@@ -108,8 +109,8 @@
         username="${gc.username}"
         password="${gc.password}"
         projectname="puffinplot" 
-        filename="dist/single-jar/${ant.project.name}.jar" 
-        targetfilename="PuffinPlot.jar"
+        filename="${release.pathname}.zip" 
+        targetfilename="puffinplot-${release.version}.zip"
         summary="PuffinPlot archive containing program and documentation."
         labels="Type-Archive, OpSys-All" />
     </target>

manual/manual.tex

@@ -490,7 +490,7 @@ \subsubsection{\label{sec:menu-file}File menu}
 
   \caption{\label{tbl:export-site} List of fields in exported site data file}
 
-\begin{tabular}{p{6.5em}p{\textwidth-6.5em}} \toprule
+\begin{tabular}{lp{90mm}} \toprule
   Field name      & Description \\ \midrule
   site            & Name of site \\
   Fisher dec.     & Mean declination of \caps{pca} directions (\textdegree) \\
@@ -508,15 +508,23 @@ \subsubsection{\label{sec:menu-file}File menu}
   \caps{gc m}     & Number of \caps{pca} directions used in great-circle fit \\
   \caps{gc} min points & the smallest number of points used to define
     any of the great circles fitted at this site \\
-  \caps{t}1min\newline \caps{t}1max\newline \caps{t}2min\newline \caps{t}2max
-    & These four parameters give the ranges of demagnetization steps used to fit
-    the circles. \caps{t}1 is the first (lowest) demagnetization step in a circle
-    path for an individual sample, and \caps{t}2 the last (highest). \caps{t}1min
-    is the minimum of the \caps{t}1 values across all the circles for the site,
-    and \caps{t}2 the maximum. Similarly, \caps{t}2 is the last step used in a
-    single circle, and \caps{t}2min--\caps{t}2max is the range of its values
-    across all the samples at a site. \\ \bottomrule
+  \caps{t}1min & See note below \\
+  \caps{t}1max & See note below \\
+  \caps{t}2min & See note below \\
+  \caps{t}2max & See note below \\ \bottomrule
 \end{tabular}
+
+\smallskip
+
+Note on \caps{t}1min, \caps{t}1max, \caps{t}2min, and \caps{t}2max: these
+four parameters give the ranges of demagnetization steps used to fit the
+circles. \caps{t}1 denotes the first (lowest) demagnetization step in a
+circle path for an individual sample, and \caps{t}2 the last (highest).
+\caps{t}1min is the minimum of the \caps{t}1 values across all the circles
+for the site, and \caps{t}1max the maximum. Similarly, \caps{t}2 denotes the
+last step used in a single circle, and \caps{t}2min--\caps{t}2max is the
+range of its values across all the samples at a site.
+
 \end{table}
 
 \item[File\submenu Export data\submenu Export suite calculations\ldots] saves

src/net/talvi/puffinplot/data/Suite.java

@@ -314,7 +314,7 @@ public void doSiteCalculations(Correction correction) {
     /**
      * <p>Creates a new suite from the specified files.
      * The is a convenience method for
-     * {@link Suite(List<File>, SensorLengths, TwoGeeLoader.Protocol)}
+     * {@link #Suite(List, SensorLengths, TwoGeeLoader.Protocol)}
      * using the default sensor lengths (1, 1, 1) and protocol 
      * ({@code NORMAL}).
      * </p>