version bumps

Author: petrelharp

.github/workflows/tests.yml

@@ -37,12 +37,6 @@ jobs:
         run: |
           echo "CONDA=$CONDA" >> $GITHUB_OUTPUT
 
-      - name: fix conda permissions
-        if: runner.os == 'macOS'
-        run: |
-          # Fix incorrect conda permissions on mac that prevent cache restore.
-          sudo chown -R $USER:staff ${{ steps.find-conda.outputs.CONDA }}
-
       - name: cache conda
         id: cache
         uses: actions/cache@v4

requirements/CI/conda.txt

@@ -1,2 +1,2 @@
-msprime==1.2.0
-slim==4.0
+msprime==1.3.3
+slim==4.3

requirements/CI/requirements.txt

@@ -1,23 +1,22 @@
-coverage==6.3.3
+coverage==7.5.4
 flake8==5.0.4
-pytest==7.3.2
-pytest-cov==4.1.0
-pytest-xdist==3.3.1
-setuptools-scm==7.1.0
+pytest==8.2.2
+pytest-cov==5.0.0
+pytest-xdist==3.6.1
+setuptools-scm==8.1.0
 sphinx==5.0.2
 sphinx-argparse==0.4.0
 sphinx-issues==3.0.1
 sphinx_rtd_theme==1.2.0
 sphinxcontrib-programoutput==0.17
-msprime==1.2.0
-attrs==21.4.0
+attrs==24.2.0
 appdirs==1.4.4
-humanize==4.6.0
+humanize==4.11.0
 pyslim==1.0.4
 numpy==1.23.5
 scipy==1.10.1
 scikit-allel==1.3.6
 biopython==1.80
 demes==0.2.2
 demesdraw==0.3.1
-kastore==0.3.2
+kastore==0.3.3