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Implement zero inflated negative binomial likelihood (ZINB) for HBR #398

Implement zero inflated negative binomial likelihood (ZINB) for HBR

Implement zero inflated negative binomial likelihood (ZINB) for HBR #398

Workflow file for this run

# This configuration does the following:
# It runs the tests when code is pushed to dev branch and
# when a pull request to dev is created.
# It sets up a Python environment, installs project dependencies, and runs pytest.
# Test results are uploaded as artifacts for later examination.
name: testing
on:
push:
branches:
- dev
pull_request:
branches:
- dev
jobs:
build:
runs-on: ubuntu-latest
steps:
- name: Checkout Repository
uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.12'
- name: Install Dependencies
run: | # Install the project dependencies, including pytest-html for generating test reports in the next steps.
pip install -e ".[dev]"
pip install pytest-html
- name: Run Tests with coverage and save report
run: |
coverage run -m pytest test/ --junitxml=report.xml --html=report.html
coverage xml -o coverage.xml
continue-on-error: true # Continue to the next step even if tests fail
- name: Upload HTML Report
uses: actions/upload-artifact@v4
with:
name: test-report-html
path: report.html
- name: Upload XML Report
uses: actions/upload-artifact@v4
with:
name: test-report-xml
path: report.xml
- name: Upload Coverage Report
uses: actions/upload-artifact@v4
with:
name: coverage-report
path: coverage.xml