Error with QAP build, looks like something to do with afni/base.py

[hpardoe]

Hi, I'm trying to run an ABIDEII subject through QAP to test if the install worked correctly but I get the following error, full output is pasted below. It looks like the nipype/nipype/interfaces/afni/base.py repo was updated a couple of weeks ago, perhaps it's something to do with that?

File "/usr/local/lib/python2.7/dist-packages/nipype/interfaces/afni/base.py", line 54, in version
currv = str(e).split('\n')[4].split('=', 1)[1].strip()
IndexError: list index out of range

Full output:
hpardoe@burekup:/mnt/raid1/qap/test$ qap_measures_pipeline.py ./output.yml ./test_run_config.yml
/usr/local/lib/python2.7/dist-packages/configparser-3.5.0-py2.7.egg/backports/init.py:8: UserWarning: Module configparser was already imported from /usr/local/lib/python2.7/dist-packages/configparser-3.5.0-py2.7.egg/configparser.pyc, but /usr/lib/python2.7/dist-packages is being added to sys.path
import pkg_resources
170706-12:53:35,181 workflow INFO:
QAP version 1.0.8
170706-12:53:35,182 workflow INFO:
Pipeline start time: 2017-07-06_12:53:35
170706-12:53:35,185 workflow INFO:
Starting bundle 1 out of 1..
170706-12:53:35,185 workflow INFO:
Participant info: _29006_session_1_anat_1
170706-12:53:35,185 workflow INFO:
Configuration settings:
{'stop_idx': 'End', 'num_sessions_at_once': 1, 'scan_id': 'anat_1', 'run_name': 'qap_run', 'num_bundles_at_once': 1, 'output_directory': '/mnt/raid1/qap/test/output', 'write_report': True, 'working_directory': '/tmp/workdir', 'pipeline_name': 'qap_run', 'pipeline_config_yaml': '/mnt/raid1/qap/test/test_run_config.yml', 'site_name': 'ABIDEII-BNI_1', 'exclude_zeros': False, 'cluster_system': 'None', 'num_processors': 1, 'available_memory': 2, 'write_graph': False, 'subject_id': '29006', 'write_all_outputs': False, 'session_id': 'session_1', 'subject_list': '/mnt/raid1/qap/test/output.yml', 'workflow_log_dir': '/mnt/raid1/qap/test/output/qap_run_logs/20170706_12_53_35_1bundles', 'template_head_for_anat': '/home/hpardoe/fsl/fsl/data/standard/MNI152_T1_2mm.nii.gz', 'start_idx': 0}
170706-12:53:35,185 workflow INFO:
Contents of resource pool for this participant:
{'site_name': 'ABIDEII-BNI_1', 'anatomical_scan': '/mnt/raid1/qap/test/ABIDEII-BNI_1/29006/session_1/anat_1/anat.nii.gz', 'starter': (starter_node, 'starter')}
Traceback (most recent call last):
File "/usr/local/bin/qap_measures_pipeline.py", line 10, in
obj.run()
File "/usr/local/lib/python2.7/dist-packages/qap/cli.py", line 611, in run
results.append(self.run_one_bundle(idx))
File "/usr/local/lib/python2.7/dist-packages/qap/cli.py", line 446, in run_one_bundle
rt = run_workflow(wfargs)
File "/usr/local/lib/python2.7/dist-packages/qap/cli.py", line 879, in run_workflow
config, name)
File "/usr/local/lib/python2.7/dist-packages/qap/qap_workflows.py", line 419, in qap_anatomical_spatial_workflow
afni_segmentation_workflow(workflow, resource_pool, config, name)
File "/usr/local/lib/python2.7/dist-packages/qap/anatomical_preproc.py", line 570, in afni_segmentation_workflow
name)
File "/usr/local/lib/python2.7/dist-packages/qap/anatomical_preproc.py", line 199, in anatomical_skullstrip_workflow
anat_skullstrip = pe.Node(interface=preprocess.SkullStrip(),
File "/usr/local/lib/python2.7/dist-packages/nipype/interfaces/afni/preprocess.py", line 1475, in init
if not no_afni():
File "/usr/local/lib/python2.7/dist-packages/nipype/interfaces/afni/base.py", line 206, in no_afni
if Info.version() is None:
File "/usr/local/lib/python2.7/dist-packages/nipype/interfaces/afni/base.py", line 54, in version
currv = str(e).split('\n')[4].split('=', 1)[1].strip()
IndexError: list index out of range