fix(ci): Revert #1982 after loky==3.5.6 fix (#1998)

Revert the `fix(ci): Temporary pin 3.13.6 in actions/setup-python`
#1982 temporary fix after
joblib/loky#459 (and
joblib/joblib#1740).

Author: thomass-dev

.github/workflows/pytest.yml

@@ -163,7 +163,7 @@ jobs:
         uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         id: setup-python
         with:
-          python-version: ${{ (matrix.python == '3.13') && '3.13.6' || matrix.python }}
+          python-version: ${{ matrix.python }}
           check-latest: True
           cache: pip
 

ci/requirements/skore-hub-project/python-3.10/scikit-learn-1.4/test-requirements.txt

@@ -2,7 +2,7 @@ altair==5.5.0
     # via skore-hub-project (skore-hub-project/pyproject.toml)
 annotated-types==0.7.0
     # via pydantic
-anyio==4.9.0
+anyio==4.10.0
     # via httpx
 anywidget==0.9.18
     # via skore
@@ -14,28 +14,28 @@ attrs==25.3.0
     #   referencing
 blake3==1.0.5
     # via skore-hub-project (skore-hub-project/pyproject.toml)
-certifi==2025.6.15
+certifi==2025.8.3
     # via
     #   httpcore
     #   httpx
     #   requests
 cfgv==3.4.0
     # via pre-commit
-charset-normalizer==3.4.2
+charset-normalizer==3.4.3
     # via requests
-comm==0.2.2
+comm==0.2.3
     # via ipywidgets
 contourpy==1.3.2
     # via matplotlib
-coverage[toml]==7.9.2
+coverage[toml]==7.10.6
     # via pytest-cov
 cycler==0.12.1
     # via matplotlib
 decorator==5.2.1
     # via ipython
 diskcache==5.6.3
     # via skore-local-project
-distlib==0.3.9
+distlib==0.4.0
     # via virtualenv
 exceptiongroup==1.3.0
     # via
@@ -46,9 +46,9 @@ execnet==2.1.1
     # via pytest-xdist
 executing==2.2.0
     # via stack-data
-filelock==3.18.0
+filelock==3.19.1
     # via virtualenv
-fonttools==4.58.5
+fonttools==4.59.2
     # via matplotlib
 h11==0.16.0
     # via httpcore
@@ -58,7 +58,7 @@ httpx==0.28.1
     # via
     #   skore-hub-project (skore-hub-project/pyproject.toml)
     #   respx
-identify==2.6.12
+identify==2.6.13
     # via pre-commit
 idna==3.10
     # via
@@ -81,25 +81,25 @@ jinja2==3.1.6
     # via
     #   altair
     #   skrub
-joblib==1.5.1
+joblib==1.5.2
     # via
     #   skore-hub-project (skore-hub-project/pyproject.toml)
     #   scikit-learn
     #   skore
     #   skore-local-project
-jsonschema==4.24.0
+jsonschema==4.25.1
     # via altair
 jsonschema-specifications==2025.4.1
     # via jsonschema
 jupyterlab-widgets==3.0.15
     # via ipywidgets
-kiwisolver==1.4.8
+kiwisolver==1.4.9
     # via matplotlib
-markdown-it-py==3.0.0
+markdown-it-py==4.0.0
     # via rich
 markupsafe==3.0.2
     # via jinja2
-matplotlib==3.10.3
+matplotlib==3.10.6
     # via
     #   skore-hub-project (skore-hub-project/pyproject.toml)
     #   seaborn
@@ -109,7 +109,7 @@ matplotlib-inline==0.1.7
     # via ipython
 mdurl==0.1.2
     # via markdown-it-py
-narwhals==1.45.0
+narwhals==2.2.0
     # via
     #   altair
     #   plotly
@@ -134,59 +134,62 @@ packaging==25.0
     #   plotly
     #   pytest
     #   skops
-    #   skrub
-pandas==2.3.0
+pandas==2.3.2
     # via
     #   seaborn
     #   skore
     #   skrub
-parso==0.8.4
+parso==0.8.5
     # via jedi
 pexpect==4.9.0
     # via ipython
 pillow==11.3.0
     # via
     #   skore-hub-project (skore-hub-project/pyproject.toml)
     #   matplotlib
-platformdirs==4.3.8
+platformdirs==4.4.0
     # via
     #   skore-local-project
     #   virtualenv
-plotly==6.2.0
+plotly==6.3.0
     # via
     #   skore-hub-project (skore-hub-project/pyproject.toml)
     #   skore
 pluggy==1.6.0
     # via
     #   pytest
     #   pytest-cov
-polars==1.31.0
+polars==1.32.3
     # via skore-hub-project (skore-hub-project/pyproject.toml)
-pre-commit==4.2.0
+pre-commit==4.3.0
     # via skore-hub-project (skore-hub-project/pyproject.toml)
 prettytable==3.16.0
     # via skops
-prompt-toolkit==3.0.51
+prompt-toolkit==3.0.52
     # via ipython
-psygnal==0.14.0
+psygnal==0.14.1
     # via anywidget
 ptyprocess==0.7.0
     # via pexpect
 pure-eval==0.2.3
     # via stack-data
-pyarrow==20.0.0
+pyarrow==21.0.0
     # via skore-hub-project (skore-hub-project/pyproject.toml)
 pydantic==2.11.7
     # via skore-hub-project (skore-hub-project/pyproject.toml)
 pydantic-core==2.33.2
     # via pydantic
+pydot==4.0.1
+    # via skrub
 pygments==2.19.2
     # via
     #   ipython
     #   pytest
     #   rich
 pyparsing==3.2.3
-    # via matplotlib
+    # via
+    #   matplotlib
+    #   pydot
 pytest==8.4.1
     # via
     #   skore-hub-project (skore-hub-project/pyproject.toml)
@@ -214,16 +217,16 @@ referencing==0.36.2
     # via
     #   jsonschema
     #   jsonschema-specifications
-requests==2.32.4
+requests==2.32.5
     # via skrub
 respx==0.22.0
     # via skore-hub-project (skore-hub-project/pyproject.toml)
-rich==14.0.0
+rich==14.1.0
     # via
     #   skore-hub-project (skore-hub-project/pyproject.toml)
     #   skore
     #   skore-local-project
-rpds-py==0.26.0
+rpds-py==0.27.1
     # via
     #   jsonschema
     #   referencing
@@ -249,7 +252,7 @@ skore==0.10.1
     # via skore-hub-project (skore-hub-project/pyproject.toml)
 skore-local-project==0.0.3
     # via skore
-skrub==0.5.4
+skrub==0.6.1
     # via
     #   skore-hub-project (skore-hub-project/pyproject.toml)
     #   skore
@@ -265,11 +268,10 @@ tomli==2.2.1
     #   pytest
 traitlets==5.14.3
     # via
-    #   comm
     #   ipython
     #   ipywidgets
     #   matplotlib-inline
-typing-extensions==4.14.1
+typing-extensions==4.15.0
     # via
     #   altair
     #   anyio
@@ -279,15 +281,15 @@ typing-extensions==4.14.1
     #   pydantic
     #   pydantic-core
     #   referencing
-    #   rich
     #   typing-inspection
+    #   virtualenv
 typing-inspection==0.4.1
     # via pydantic
 tzdata==2025.2
     # via pandas
 urllib3==2.5.0
     # via requests
-virtualenv==20.31.2
+virtualenv==20.34.0
     # via pre-commit
 wcwidth==0.2.13
     # via