Add a timeout configuration parameter

[Jandev]

I was confronted with a timeout issue when searching through a repository. Mentioned it in this thread of the probe repository: probelabs/probe#36

Setting the timeout value to 90 seconds (and 600 seconds) solved my issue. The repository I was searching through was on disk and ~40MB in size.
It would be great if this timeout value could be exposed as a configuration parameter.

To solve for myself, I've added the timeout: 600 to the search options.

/**
 * Execute a documentation search
 * @param {SearchDocsArgs} args - Search arguments
 * @returns {Promise<string>} Search results
 * @private
 */
async executeDocsSearch(args) {
	try {
		// Always use the configured data directory
		const searchPath = config.dataDir;

		// Create a clean options object
		const options = {
			timeout: 600, // <---- Added this to the options.
			path: searchPath,
			query: args.query,
			maxTokens: 10000 // Set default maxTokens
			// Removed filesOnly, maxResults, session
		};

		console.error("Executing search with options:", JSON.stringify(options, null, 2));

		// Call search with the options object
		const result = await search(options);
		return result;
	} catch (error) {
		console.error('Error executing docs search:', error);
		throw new McpError(
			ErrorCode.MethodNotFound,
			`Error executing docs search: ${error.message || String(error)}`
		);
	}
}