-
Notifications
You must be signed in to change notification settings - Fork 33
Expand file tree
/
Copy pathpartition-igk.yaml
More file actions
1 lines (1 loc) · 58.7 KB
/
partition-igk.yaml
File metadata and controls
1 lines (1 loc) · 58.7 KB
1
{"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igk", "functionalities": {}, "seqs": {"v": {"IGKV1-12*01": "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTCC", "IGKV1-27*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCGAGTCAGGGCATTAGCAATTATTTAGCCTGGTATCAGCAGAAACCAGGGAAAGTTCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAATCAGGGGTCCCATCTCGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATGTTGCAACTTATTACTGTCAAAAGTATAACAGTGCCCCTCC", "IGKV1-33*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCC", "IGKV1-5*01": "GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTCC", "IGKV1-8*03": "GCCATCCGGATGACCCAGTCTCCATCCTCACTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCTCC", "IGKV1-9*01": "GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCC", "IGKV1D-13*02": "GCCATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGCAGTGCTTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCTCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGTTTAATAGTTACCCTCA", "IGKV1D-39*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCC", "IGKV2-24*01": "GATATTGTGATGACCCAGACTCCACTCTCCTCACCTGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTACACAGTGATGGAAACACCTACTTGAGTTGGCTTCAGCAGAGGCCAGGCCAGCCTCCAAGACTCCTAATTTATAAGATTTCTAACCGGTTCTCTGGGGTCCCAGACAGATTCAGTGGCAGTGGGGCAGGGACAGATTTCACACTGAAAATCAGCAGGGTGGAAGCTGAGGATGTCGGGGTTTATTACTGCATGCAAGCTACACAATTTCCTCA", "IGKV2-30*01": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCTCC", "IGKV2D-28*01": "GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCTCC", "IGKV3-11*01": "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCC", "IGKV3-15*01": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCC", "IGKV3-20*01": "GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCTCC", "IGKV4-1*02": "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCCTCC", "IGKV6-21*01": "GAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGTCAGAGCATTGGTAGTAGCTTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAGTATGCTTCCCAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGTCATCAGAGTAGTAGTTTACCTCA"}, "d": {"IGKDx-x*x": "A"}, "j": {"IGKJ1*01": "GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "IGKJ2*01": "TGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*03": "TGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*04": "TGTGCAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ3*01": "ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "IGKJ4*01": "GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "IGKJ5*01": "GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC"}}, "cyst-positions": {"IGKV1-5*01": 261, "IGKV1-9*01": 261, "IGKV3-20*01": 264, "IGKV2-24*01": 276, "IGKV1-33*01": 261, "IGKV1-12*01": 261, "IGKV2D-28*01": 276, "IGKV1-27*01": 261, "IGKV6-21*01": 261, "IGKV3-11*01": 261, "IGKV1D-39*01": 261, "IGKV1D-13*02": 261, "IGKV3-15*01": 261, "IGKV4-1*02": 279, "IGKV2-30*01": 276, "IGKV1-8*03": 261}, "phen-positions": {"IGKJ3*01": 7, "IGKJ5*01": 7, "IGKJ4*01": 7, "IGKJ2*04": 8, "IGKJ2*03": 8, "IGKJ2*01": 8, "IGKJ1*01": 7}}, "partitions": [{"logprob": 0.0, "n_clusters": 33, "n_procs": 1, "partition": [["AAACCTGGTAACGCGA-1_contig_2", "AAACGGGAGATAGCAT-1_contig_2", "AAACGGGAGGCCCTTG-1_contig_2"], ["AAACCTGGTCAACATC-1_contig_2"], ["AAAGATGCAATGTAAG-1_contig_2"], ["AAAGATGCATCGTCGG-1_contig_2"], ["AAACCTGAGAGACGAA-1_contig_1"], ["AAACCTGAGCGCCTTG-1_contig_1"], ["AAACCTGCAGAGCCAA-1_contig_1"], ["AAACCTGCAGGGTTAG-1_contig_1"], ["AAACCTGCATCGACGC-1_contig_2"], ["AAACCTGCATTACCTT-1_contig_1"], ["AAACCTGGTCTTGCGG-1_contig_1"], ["AAACCTGGTGAACCTT-1_contig_1"], ["AAACCTGGTTACGCGC-1_contig_2"], ["AAACCTGTCATATCGG-1_contig_2", "AAACGGGAGTCATCCA-1_contig_2"], ["AAACCTGTCGGAAACG-1_contig_1"], ["AAACGGGAGAAACGCC-1_contig_2", "AAAGATGCAATGTAAG-1_contig_1"], ["AAACGGGAGCGTTGCC-1_contig_1"], ["AAACGGGGTTGTACAC-1_contig_1"], ["AAACGGGTCGTGACAT-1_contig_1"], ["AAAGATGAGCTGAACG-1_contig_1"], ["AAAGATGAGGACCACA-1_contig_1"], ["AAAGATGCACCAGCAC-1_contig_2"], ["AAAGATGGTATAATGG-1_contig_2"], ["AAACCTGAGTGAACAT-1_contig_1"], ["AAACCTGCAGTGAGTG-1_contig_2"], ["AAACCTGTCATCTGCC-1_contig_1"], ["AAACCTGTCCGGCACA-1_contig_1"], ["AAACGGGAGCACACAG-1_contig_1"], ["AAAGATGCACGACGAA-1_contig_1"], ["AAAGATGCACGGACAA-1_contig_1"], ["AAACCTGGTTCAGTAC-1_contig_1"], ["AAACCTGTCCGAAGAG-1_contig_1"], ["AAAGATGAGACTAAGT-1_contig_1"]]}], "events": [{"qr_gap_seqs": ["", "", ""], "gl_gap_seqs": ["", "", ""], "indel_reversed_seqs": ["", "", ""], "unique_ids": ["AAACCTGGTAACGCGA-1_contig_2", "AAACGGGAGATAGCAT-1_contig_2", "AAACGGGAGGCCCTTG-1_contig_2"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 30, "mature_cdr3_lengths": [30, 30, 30], "mut_freqs": [0.0, 0.003134796238244514, 0.0], "n_mutations": [0, 1, 0], "input_seqs": ["NNNNNNNNNNNNNNNGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "NNNNNNNNNNNNNNNGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATCATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "NNNNNNNNNNNNNNNGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "has_shm_indels": [false, false, false], "naive_seq": "NNNNNNNNNNNNNNNGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[], [], []], "leader_seqs": ["", "", ""], "c_gene_seqs": ["", "", ""], "v_per_gene_support": {"IGKV3-15*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ1*01": 1.0}, "v_3p_del": 6, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, true], "stops": [false, false, false], "codon_positions": {"v": 276, "j": 303}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGGTCAACATC-1_contig_2"], "invalid": false, "v_gene": "IGKV3-11*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 30, "mature_cdr3_lengths": [30], "mut_freqs": [0.0219435736677116], "n_mutations": [7], "input_seqs": ["NNNNNNNNNNNNNNNGAAATTGTGTTGACACAATCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTTCTTAGCCTGGTATCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTCTGATACATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCATCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTCGCAACTGGCCCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV3-11*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ4*01": 0.9999981868643554, "IGKJ1*01": 1.813135641141175e-06}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 3, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 276, "j": 303}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAAGATGCAATGTAAG-1_contig_2"], "invalid": false, "v_gene": "IGKV2D-28*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 30, "mature_cdr3_lengths": [30], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "has_shm_indels": [false], "naive_seq": "GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV2D-28*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ1*01": 1.0}, "v_3p_del": 7, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "C", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 276, "j": 303}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAAGATGCATCGTCGG-1_contig_2"], "invalid": false, "v_gene": "IGKV1D-39*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 30, "mature_cdr3_lengths": [30], "mut_freqs": [0.025078369905956112], "n_mutations": [8], "input_seqs": ["NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAACTTTTTACATTGGTATCAGCAAAAACCAGGGAAAGCCCCTAACCTCCTGATCTATGCTGCATCCAGCTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTATGCAACTTACTACTGTCAACAGACTTACAGTACCCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1D-39*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ4*01": 0.9999999556825837, "IGKJ3*01": 4.4317418443606924e-08}, "v_3p_del": 5, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 276, "j": 303}}, {"qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "unique_ids": ["AAACCTGTCATATCGG-1_contig_2", "AAACGGGAGTCATCCA-1_contig_2"], "invalid": false, "v_gene": "IGKV2D-28*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 33, "mature_cdr3_lengths": [33, 33], "mut_freqs": [0.002967359050445104, 0.0], "n_mutations": [1, 0], "input_seqs": ["NNNGATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "NNNGATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [false, false], "naive_seq": "NNNGATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[], []], "leader_seqs": ["", ""], "c_gene_seqs": ["", ""], "v_per_gene_support": {"IGKV2D-28*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ4*01": 1.0, "IGKJ3*01": 6.073947765423925e-19}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "unique_ids": ["AAACGGGAGAAACGCC-1_contig_2", "AAAGATGCAATGTAAG-1_contig_1"], "invalid": false, "v_gene": "IGKV2-30*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*01", "cdr3_length": 33, "mature_cdr3_lengths": [33, 33], "mut_freqs": [0.02373887240356083, 0.0], "n_mutations": [8, 0], "input_seqs": ["NNNGATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTTTATAGTGATGGAGACACCTACTTGAATTGGTTTCACCAGAGGCCAGGCCAATCTCCAAGGCGCCTATTTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACATACTGGCCTTACACTCTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "NNNGATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "has_shm_indels": [false, false], "naive_seq": "NNNGATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[], []], "leader_seqs": ["", ""], "c_gene_seqs": ["", ""], "v_per_gene_support": {"IGKV2-30*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ2*01": 0.9998458978885671, "IGKJ2*03": 0.00015410211143900972}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [true, false], "in_frames": [true, true], "stops": [false, false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGAGAGACGAA-1_contig_1"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.006211180124223602], "n_mutations": [2], "input_seqs": ["NNNNNNNNNNNNNNNNNNGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCGGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCACAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNNNNGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV3-15*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ4*01": 0.9999999994816022, "IGKJ3*01": 5.183994662411653e-10}, "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNNNNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGAGCGCCTTG-1_contig_1"], "invalid": false, "v_gene": "IGKV2-30*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ3*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.005934718100890208], "n_mutations": [2], "input_seqs": ["NNNGATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATATAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAATCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCGTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNGATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCGTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV2-30*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ3*01": 1.0}, "v_3p_del": 4, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "GT", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGCAGAGCCAA-1_contig_1"], "invalid": false, "v_gene": "IGKV1-9*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ5*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.012422360248447204], "n_mutations": [4], "input_seqs": ["NNNNNNNNNNNNNNNNNNGCCATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNNNNGACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1-9*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ5*01": 1.0}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNNNNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGCAGGGTTAG-1_contig_1"], "invalid": false, "v_gene": "IGKV1-33*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ5*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["NNNNNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCCCTCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCCCTCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1-33*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ5*01": 1.0}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "CC", "fv_insertion": "NNNNNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGCATCGACGC-1_contig_2"], "invalid": false, "v_gene": "IGKV2D-28*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.005934718100890208], "n_mutations": [2], "input_seqs": ["NNNGATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCCCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCACTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNGATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV2D-28*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ1*01": 1.0}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGCATTACCTT-1_contig_1"], "invalid": false, "v_gene": "IGKV3-11*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.021739130434782608], "n_mutations": [7], "input_seqs": ["NNNNNNNNNNNNNNNNNNGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAACAGCTTCTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCGTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACTGACTTCACGCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGGAGTTTATTACTGTCAGCAACGTAGCAACTGGCCTCAGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNNNNGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCAGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV3-11*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ1*01": 0.9999934577966331, "IGKJ4*01": 6.542203371850783e-06}, "v_3p_del": 1, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 3, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "A", "fv_insertion": "NNNNNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGGTCTTGCGG-1_contig_1"], "invalid": false, "v_gene": "IGKV3-20*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["NNNNNNNNNNNNNNNGAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNGAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV3-20*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ2*01": 0.9978947634769088, "IGKJ2*03": 0.002105236523086531}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGGTGAACCTT-1_contig_1"], "invalid": false, "v_gene": "IGKV1-27*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["NNNNNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCGAGTCAGGGCATTAGCAATTATTTAGCCTGGTATCAGCAGAAACCAGGGAAAGTTCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAATCAGGGGTCCCATCTCGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATGTTGCAACTTATTACTGTCAAAAGTATAACAGTGCCCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCGAGTCAGGGCATTAGCAATTATTTAGCCTGGTATCAGCAGAAACCAGGGAAAGTTCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAATCAGGGGTCCCATCTCGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATGTTGCAACTTATTACTGTCAAAAGTATAACAGTGCCCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1-27*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ1*01": 1.0}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNNNNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGGTTACGCGC-1_contig_2"], "invalid": false, "v_gene": "IGKV4-1*02", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCTTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCTTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV4-1*02": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ4*01": 0.9999999999347438, "IGKJ3*01": 6.525626884646444e-11}, "v_3p_del": 4, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "TT", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGTCGGAAACG-1_contig_1"], "invalid": false, "v_gene": "IGKV1D-39*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.055900621118012424], "n_mutations": [18], "input_seqs": ["NNNNNNNNNNNNNNNNNNGACATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGGGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCGGCTATTTACATTGGTATCAGCAGAAACCAGGGAAAGCCCCTGAATTCCTGATTTATCTTGCATCCAGTTTGCAAAGTGGGGTCCCATCTAGGTTCCGTGGCAGTGGATCTGGGACATATTTCACTCTCACCATCAGCAGTCTTCAGGTTGAAGATTTTGCGACTTACTACTGTCAACAGAGTTACAGTACCCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1D-39*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ4*01": 0.9999994937385142, "IGKJ3*01": 5.062614982142421e-07}, "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNNNNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACGGGAGCGTTGCC-1_contig_1"], "invalid": false, "v_gene": "IGKV2-24*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["NNNGATATTGTGATGACCCAGACTCCACTCTCCTCACCTGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTACACAGTGATGGAAACACCTACTTGAGTTGGCTTCAGCAGAGGCCAGGCCAGCCTCCAAGACTCCTAATTTATAAGATTTCTAACCGGTTCTCTGGGGTCCCAGACAGATTCAGTGGCAGTGGGGCAGGGACAGATTTCACACTGAAAATCAGCAGGGTGGAAGCTGAGGATGTCGGGGTTTATTACTGCATGCAAGCTACACAATTTCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNGATATTGTGATGACCCAGACTCCACTCTCCTCACCTGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTACACAGTGATGGAAACACCTACTTGAGTTGGCTTCAGCAGAGGCCAGGCCAGCCTCCAAGACTCCTAATTTATAAGATTTCTAACCGGTTCTCTGGGGTCCCAGACAGATTCAGTGGCAGTGGGGCAGGGACAGATTTCACACTGAAAATCAGCAGGGTGGAAGCTGAGGATGTCGGGGTTTATTACTGCATGCAAGCTACACAATTTCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV2-24*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ2*01": 0.9978826428638947, "IGKJ2*03": 0.002117357136103874}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACGGGGTTGTACAC-1_contig_1"], "invalid": false, "v_gene": "IGKV1D-13*02", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ3*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.031055900621118012], "n_mutations": [10], "input_seqs": ["NNNNNNNNNNNNNNNNNNGCCATCCAGTTGACCCAGTCTCCATCCTCCCTCTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGCAGTGCTTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCTCCTAAGCTCCTGATCTATGCTGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCACCAGTTTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAATTTAACAGTTACCTCCACACTTTCGGCCCTGGGACCAAAGTGGAAATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNNNNGCCATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGCAGTGCTTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCTCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGTTTAATAGTTACCTCTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1D-13*02": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ3*01": 0.9999806064572191, "IGKJ1*01": 1.9393542779254612e-05}, "v_3p_del": 4, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "TC", "fv_insertion": "NNNNNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACGGGTCGTGACAT-1_contig_1"], "invalid": false, "v_gene": "IGKV1-8*03", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.006211180124223602], "n_mutations": [2], "input_seqs": ["NNNNNNNNNNNNNNNNNNGCCATCCGGATGACCCAGTCTCCATCCTCACTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAGAACCAGGGAAAGCCCCTAACCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCGGACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNNNNGCCATCCGGATGACCCAGTCTCCATCCTCACTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCGGACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1-8*03": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ2*01": 0.9956592848502828, "IGKJ2*03": 0.004340715149712009}, "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 3, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "GG", "fv_insertion": "NNNNNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAAGATGAGCTGAACG-1_contig_1"], "invalid": false, "v_gene": "IGKV3-20*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ3*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["NNNNNNNNNNNNNNNGAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNGAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV3-20*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ3*01": 1.0}, "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAAGATGAGGACCACA-1_contig_1"], "invalid": false, "v_gene": "IGKV1-12*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ3*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.049689440993788817], "n_mutations": [16], "input_seqs": ["NNNNNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCGTCTTCCGTGTCTGCATCTGTGGGAGACAGAGTCACCATCATTTGTCGGGCGAGTCACGGTATCAGCAGGATGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCCGCAGACACCTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGAGCTGGGACAGAATTCTCTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNNNNGACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1-12*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ3*01": 1.0}, "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNNNNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAAGATGCACCAGCAC-1_contig_2"], "invalid": false, "v_gene": "IGKV2D-28*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ5*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["NNNGATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCTATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC"], "has_shm_indels": [false], "naive_seq": "NNNGATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCTATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV2D-28*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ5*01": 1.0}, "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAAGATGGTATAATGG-1_contig_2"], "invalid": false, "v_gene": "IGKV6-21*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ3*01", "cdr3_length": 33, "mature_cdr3_lengths": [33], "mut_freqs": [0.003105590062111801], "n_mutations": [1], "input_seqs": ["NNNNNNNNNNNNNNNNNNGAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGTCAGAGCATTGGTAGTAGCTTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAGTATGCTTCCCAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGTCATCAGAGTAGTAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNNNNNNNNNNNNNNNNGAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGTCAGAGCATTGGTAGTAGCTTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAGTATGCTTCCCAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGTCATCAGAGTAGTAGTTTACCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV6-21*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ3*01": 1.0}, "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNNNNNNNNNNNNNNNNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 279, "j": 309}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGAGTGAACAT-1_contig_1"], "invalid": false, "v_gene": "IGKV1D-39*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*03", "cdr3_length": 36, "mature_cdr3_lengths": [36], "mut_freqs": [0.07384615384615385], "n_mutations": [24], "input_seqs": ["NNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTGGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAACATTGGCAGCTATTTAAATTGGTATCAACAGAAGGCAGGGAAAGCCCCTAAACTCCTGATCTCTGCTGCATCGCATCTGCAGAGTGGGGTCCCATCACGGTTCAGTGGCAGTGGGTCTGGGACAGATTTCGCTCTCACCATCAGCAGTGTGCAACGTGAAGATTTTGCAACTTATTATTGTCAACAGAGTTACAGTACCCCTCCGTATAGTTTTGGCCAGGGGACCAAACTAGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1D-39*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ2*03": 0.8265157276067987, "IGKJ2*04": 0.17348427239317848}, "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 264, "j": 297}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGCAGTGAGTG-1_contig_2"], "invalid": false, "v_gene": "IGKV1-33*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 36, "mature_cdr3_lengths": [36], "mut_freqs": [0.003076923076923077], "n_mutations": [1], "input_seqs": ["NNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGGTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNGACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1-33*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ4*01": 0.9999999977650873, "IGKJ3*01": 2.2349097226770415e-09}, "v_3p_del": 1, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "G", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 264, "j": 297}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGTCATCTGCC-1_contig_1"], "invalid": false, "v_gene": "IGKV3-11*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 36, "mature_cdr3_lengths": [36], "mut_freqs": [0.003076923076923077], "n_mutations": [1], "input_seqs": ["NNNGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCTTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNGAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV3-11*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ4*01": 1.0}, "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 264, "j": 297}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGTCCGGCACA-1_contig_1"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ5*01", "cdr3_length": 36, "mature_cdr3_lengths": [36], "mut_freqs": [0.003076923076923077], "n_mutations": [1], "input_seqs": ["NNNGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCCCCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC"], "has_shm_indels": [false], "naive_seq": "NNNGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCCGATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV3-15*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ5*01": 1.0}, "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 264, "j": 297}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACGGGAGCACACAG-1_contig_1"], "invalid": false, "v_gene": "IGKV1-8*03", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*01", "cdr3_length": 36, "mature_cdr3_lengths": [36], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["NNNGCCATCCGGATGACCCAGTCTCCATCCTCACTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCTCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNGCCATCCGGATGACCCAGTCTCCATCCTCACTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCTCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1-8*03": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ2*01": 0.9942198458315546, "IGKJ2*03": 0.00578015416844679}, "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 264, "j": 297}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAAGATGCACGACGAA-1_contig_1"], "invalid": false, "v_gene": "IGKV3-20*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 36, "mature_cdr3_lengths": [36], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCTCCGGGCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCTCCGGGCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV3-20*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ4*01": 0.9999999704909546, "IGKJ1*01": 2.950904443689047e-08}, "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 3, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "GGG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 264, "j": 297}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAAGATGCACGGACAA-1_contig_1"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 36, "mature_cdr3_lengths": [36], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["NNNGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "has_shm_indels": [false], "naive_seq": "NNNGAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCCGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV3-15*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ1*01": 1.0}, "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "NNN", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 264, "j": 297}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGGTTCAGTAC-1_contig_1"], "invalid": false, "v_gene": "IGKV3-11*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*04", "cdr3_length": 39, "mature_cdr3_lengths": [39], "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGATGTGCAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGATGTGCAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV3-11*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ2*04": 0.9800329739004993, "IGKJ2*03": 0.01996702609950291}, "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "GA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 261, "j": 297}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAACCTGTCCGAAGAG-1_contig_1"], "invalid": false, "v_gene": "IGKV1-5*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 39, "mature_cdr3_lengths": [39], "mut_freqs": [0.06097560975609756], "n_mutations": [20], "input_seqs": ["GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGATATTAATAAGTGGTTGGCCTGGTATCGCCGGAGACCAGGGACAGCCCCTAACCTCCTGATCTATGATGCCTCCACTTTGGAAAATGGGGTCCCATCAAGGTTCAGCGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAATATAATAATTATATTCCCCCGCTCACTTTCGGCGGAGGGACCAAGGTTGAGATCAAAC"], "has_shm_indels": [false], "naive_seq": "GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTCCCCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1-5*01": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ4*01": 1.0}, "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "CCC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 261, "j": 297}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["AAAGATGAGACTAAGT-1_contig_1"], "invalid": false, "v_gene": "IGKV1D-13*02", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 39, "mature_cdr3_lengths": [39], "mut_freqs": [0.0975609756097561], "n_mutations": [32], "input_seqs": ["GCCTTCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCGTCTGAGGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGCCATTAGTCGTACTTTAGCCTGGTATCAGCAGAAACCAGGGAAAATTCCTGAACTCCTGATCTCTTATGGCTCCAATTTGGAAAGTGGGGTCCCATCTAGGTTCAGCGGCCATGTATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCGGCCTGGGGATTTTGCAACTTATTTCTGTCAACACTTTAATACTTTCACTCACGAAGTCACTTTCGGCGGAGGGACCAAGGTGGAGATTAAAC"], "has_shm_indels": [false], "naive_seq": "GCCATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGCAGTGCTTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCTCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGTTTAATAGTTACCCTCACGGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_per_gene_support": {"IGKV1D-13*02": 1.0}, "d_per_gene_support": {"IGKDx-x*x": 1.0}, "j_per_gene_support": {"IGKJ4*01": 0.9999972063310821, "IGKJ3*01": 2.7936689402730085e-06}, "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "CGG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 261, "j": 297}}]}