better plot html, hopefully avoid paircluster crash

Author: psathyrella

bin/compare-plotdirs.py

@@ -58,7 +58,7 @@ def compare_directories(args, plotdirlist, outdir):
         hlist = [allhists[dname].get(varname, Hist(1, 0, 1, title='null')) for dname in allhists]
         plot_single_variable(args, varname, hlist, outdir, pathnameclues=plotdirlist[0])
 
-    plotting.make_html(outdir, n_columns=4)
+    plotting.make_html(outdir, n_columns=4, new_table_each_row=True)
 
 # ----------------------------------------------------------------------------------------
 def plot_single_variable(args, varname, hlist, outdir, pathnameclues):
@@ -295,4 +295,4 @@ class MultiplyInheritedFormatter(argparse.RawTextHelpFormatter, argparse.Argumen
 
 if args.make_parent_html:  # didn't really test this very well
     fnoutstr, _ = utils.simplerun('find %s -type f -name *.svg' % args.outdir, return_out_err=True)
-    plotting.make_html(args.outdir, fnames=[fnoutstr.strip().split('\n')])
+    plotting.make_html(args.outdir, fnames=[fnoutstr.strip().split('\n')], new_table_each_row=True)

partis/paircluster.py

@@ -398,6 +398,9 @@ def getpids(line):  # return uids of all seqs paired with any seq in <line>
     n_skipped = {k : 0 for k in required_keys + ['zero-len-paired-uids', 'too-small']}
     unpaired_l_clusts = [c for c in l_part]
     for h_clust in h_part:
+        if ':'.join(h_clust) not in h_atn_dict:  # note sure if this really avoids it, and i wish i knew how it could be missing, but don't have time right now to track it down
+            print('    %s cluster %s missing from h_atn_dict, skipping' % (utils.wrnstr(), ':'.join(h_clust)))
+            continue
         h_atn = h_atn_dict[':'.join(h_clust)]
         h_pids = getpids(h_atn)