barcode overlap checking needs to limit overlap from start

[jinfengzou-uhn]

extract_barcode.py

for barcode in blist:
if sum([barcode in b for b in blist]) > 1:
overlap = True

"startswith" is better than "in": if sum([b.startswith(barcode) b for b in blist]) > 1
For example, ACG and TACG are not overlapped.