Fix CPU flags in psydac/api/settings.py (#569)
#549
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| # This workflow will install Python dependencies and run tests with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Unit tests | |
| on: | |
| push: | |
| branches: [ devel, main ] | |
| paths: | |
| - 'psydac/**' | |
| - 'pytest.ini' | |
| - 'pyproject.toml' | |
| pull_request: | |
| branches: [ devel, main ] | |
| types: | |
| - ready_for_review | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-24.04, macos-14 ] | |
| python-version: [ '3.10', '3.11', '3.12', '3.13', '3.14' ] | |
| isMerge: | |
| - ${{ github.event_name == 'push' && github.ref == 'refs/heads/devel' }} | |
| exclude: | |
| - { isMerge: false, python-version: '3.10', os: macos-14 } | |
| - { isMerge: false, python-version: '3.11', os: ubuntu-24.04 } | |
| - { isMerge: false, python-version: '3.12', os: macos-14 } | |
| - { isMerge: false, python-version: '3.13', os: ubuntu-24.04 } | |
| - { isMerge: false, python-version: '3.14', os: macos-14 } | |
| name: ${{ matrix.os }} / Python ${{ matrix.python-version }} | |
| env: | |
| OMP_NUM_THREADS: 2 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| cache-dependency-path: | | |
| pyproject.toml | |
| - name: Install non-Python dependencies on Ubuntu | |
| if: matrix.os == 'ubuntu-24.04' | |
| uses: ./.github/actions/ubuntu_install | |
| - name: Install non-Python dependencies on macOS | |
| if: matrix.os == 'macos-14' | |
| uses: ./.github/actions/macos_install | |
| - name: Print information on MPI and HDF5 libraries | |
| run: | | |
| ompi_info | |
| h5pcc -showconfig -echo || true | |
| - name: Upgrade pip, setuptools, and wheel | |
| run: | | |
| pip install --upgrade pip setuptools wheel | |
| - name: Cache PETSc | |
| uses: actions/cache@v4 | |
| id: cache-petsc | |
| env: | |
| cache-name: cache-PETSc | |
| with: | |
| path: "./petsc" | |
| key: petsc-${{ matrix.os }}-${{ matrix.python-version }} | |
| - if: steps.cache-petsc.outputs.cache-hit != 'true' | |
| name: Download a specific release of PETSc | |
| run: | | |
| git clone --depth 1 -b release https://gitlab.com/petsc/petsc.git | |
| # when a tag will be available for the latest release we can install with | |
| # git clone --depth 1 --branch v*.**.* https://gitlab.com/petsc/petsc.git | |
| - if: steps.cache-petsc.outputs.cache-hit != 'true' | |
| name: Install PETSc with complex support | |
| working-directory: ./petsc | |
| run: | | |
| export PETSC_DIR=$(pwd) | |
| export PETSC_ARCH=petsc-cmplx | |
| ./configure --with-scalar-type=complex --with-fortran-bindings=0 --have-numpy=1 | |
| make all | |
| echo "PETSC_DIR=$PETSC_DIR" > petsc.env | |
| echo "PETSC_ARCH=$PETSC_ARCH" >> petsc.env | |
| # This step is not really necessary and could be combined with PETSc install | |
| # step; however it's good to verify if the cached PETSc installation really works! | |
| - name: Test PETSc installation | |
| working-directory: ./petsc | |
| run: | | |
| source petsc.env | |
| make check | |
| echo "PETSC_DIR=$PETSC_DIR" >> $GITHUB_ENV | |
| echo "PETSC_ARCH=$PETSC_ARCH" >> $GITHUB_ENV | |
| - name: Install petsc4py | |
| working-directory: ./petsc | |
| run: | | |
| pip install wheel Cython numpy | |
| pip install src/binding/petsc4py | |
| - name: Install h5py in parallel mode | |
| uses: ./.github/actions/parallel_h5py | |
| - name: Install project | |
| run: | | |
| pip install .[test] | |
| pip freeze | |
| - name: Test Pyccel optimization flags | |
| run: | | |
| pytest --pyargs psydac -m pyccel --capture=no | |
| - name: Initialize test directory | |
| run: | | |
| mkdir pytest | |
| - name: Run coverage tests on macOS | |
| if: matrix.os == 'macos-14' | |
| working-directory: ./pytest | |
| run: >- | |
| pytest -n auto | |
| --cov psydac | |
| --cov-config $GITHUB_WORKSPACE/pyproject.toml | |
| --cov-report xml | |
| --pyargs psydac -m "not mpi and not petsc" -ra | |
| - name: Run single-process tests with Pytest on Ubuntu | |
| if: matrix.os == 'ubuntu-24.04' | |
| working-directory: ./pytest | |
| run: | | |
| psydac test | |
| - name: Upload coverage report to Codacy | |
| if: matrix.os == 'macos-14' | |
| uses: codacy/codacy-coverage-reporter-action@v1.3.0 | |
| with: | |
| project-token: ${{ secrets.CODACY_PROJECT_TOKEN }} | |
| coverage-reports: ./pytest/coverage.xml | |
| - name: Print detailed coverage results on macOS | |
| if: matrix.os == 'macos-14' | |
| working-directory: ./pytest | |
| run: | | |
| coverage report --ignore-errors --show-missing --sort=cover | |
| - name: Run MPI tests with Pytest | |
| working-directory: ./pytest | |
| run: | | |
| psydac test --mpi | |
| - name: Run single-process PETSc tests with Pytest | |
| working-directory: ./pytest | |
| run: | | |
| psydac test --petsc | |
| - name: Run MPI PETSc tests with Pytest | |
| working-directory: ./pytest | |
| run: | | |
| psydac test --mpi --petsc | |
| - name: Run single-process example tests with Pytest on Ubuntu | |
| if: matrix.os == 'ubuntu-24.04' | |
| run: | | |
| python -m pytest examples/feec | |
| - name: Remove test directory | |
| if: always() | |
| run: | | |
| rm -rf pytest |