Dockerfile

FROM continuumio/miniconda3
MAINTAINER vsochat@stanford.edu

# VERSION=$(cat VERSION)
# docker build -t pydicom/dicom:v${VERSION} .

ENV DCMTK_VERSION=dcmtk-3.6.5
ENV DCMTK_PREFIX=/opt/dcmtk365
ENV PATH=$PATH:${DCMTK_PREFIX}/bin:/opt/conda/bin

RUN mkdir /code
ADD run.sh /code

RUN apt-get update && apt-get install -y build-essential \
                                         cmake  \
                                         dcm2niix \
                                         pigz \
                                         wget \
                                         vim \
                                         libpng-dev \
                                         libtiff5-dev \
                                         libxml2-dev  \
                                         libjpeg62-turbo-dev \
                                         zlib1g-dev  \
                                         libwrap0-dev \ 
                                         libssl-dev 

RUN mkdir /data

# Install pydicom

WORKDIR /tmp
RUN git clone https://www.github.com/pydicom/pynetdicom3.git && \
    git clone https://www.github.com/pydicom/pydicom.git && \
    cd /tmp/pydicom && \
    /opt/conda/bin/python setup.py install && \
    cd /tmp/pynetdicom3 && \
    /opt/conda/bin/python setup.py install && \
    /opt/conda/bin/conda install -y ipython

# Releases are here http://dicom.offis.de/download/dcmtk/
RUN wget http://dicom.offis.de/download/dcmtk/release/${DCMTK_VERSION}.tar.gz && \
    tar xzvf ${DCMTK_VERSION}.tar.gz && \
    cd ${DCMTK_VERSION} && \
    cmake -DCMAKE_INSTALL_PREFIX=${DCMTK_PREFIX} && \
    make all && \
    make install

CMD ["/bin/bash","/code/run.sh"]