More python control (#151)

* Add python paths in more jobs

All the ones where we are running our local code. Also bumping the tag

Signed-off-by: liamhuber <liamhuber@greyhavensolutions.com>

* Add python version to setup of linters

Signed-off-by: liamhuber <liamhuber@greyhavensolutions.com>

---------

Signed-off-by: liamhuber <liamhuber@greyhavensolutions.com>

Author: liamhuber

.github/workflows/dependabot-pr.yml

@@ -25,7 +25,7 @@ jobs:
           ref: ${{ github.event.pull_request.head.ref }} # Check out the head of the actual branch, not the PR
           fetch-depth: 0 # otherwise, you will fail to push refs to dest repo
           token: ${{ secrets.DEPENDABOT_WORKFLOW_TOKEN }}
-      - uses: pyiron/actions/update-env-files@actions-4.0.3
+      - uses: pyiron/actions/update-env-files@actions-4.0.4
       - name: UpdateDependabotPR commit
         run: |
           git config --local user.email "pyiron@mpie.de"

.github/workflows/pr-labeled.yml

@@ -48,10 +48,10 @@ jobs:
 
   tests-and-coverage:
     if: contains(github.event.pull_request.labels.*.name, 'run_coverage')
-    uses: pyiron/actions/.github/workflows/tests-and-coverage.yml@actions-4.0.3
+    uses: pyiron/actions/.github/workflows/tests-and-coverage.yml@actions-4.0.4
     secrets: inherit
 
   code-ql:
     if: contains(github.event.pull_request.labels.*.name, 'run_CodeQL')
-    uses: pyiron/actions/.github/workflows/codeql.yml@actions-4.0.3
+    uses: pyiron/actions/.github/workflows/codeql.yml@actions-4.0.4
     secrets: inherit

.github/workflows/push-pull.yml

@@ -202,11 +202,11 @@ jobs:
           ref: ${{ github.event.pull_request.head.ref }} # Check out the head of the actual branch, not the PR
           fetch-depth: 0 # otherwise, you will fail to push refs to dest repo
         if: ${{ inputs.do-commit-updated-env }}
-      - uses: pyiron/actions/write-docs-env@actions-4.0.3
+      - uses: pyiron/actions/write-docs-env@actions-4.0.4
         with:
           env-files: ${{ inputs.docs-env-files }}
         if: ${{ inputs.do-commit-updated-env }}
-      - uses: pyiron/actions/write-environment@actions-4.0.3
+      - uses: pyiron/actions/write-environment@actions-4.0.4
         with:
           env-files: ${{ inputs.notebooks-env-files }}
           output-env-file: .binder/environment.yml
@@ -233,7 +233,11 @@ jobs:
     runs-on: ${{ inputs.runner }}
     steps:
       - uses: actions/checkout@v4
-      - uses: pyiron/actions/build-docs@actions-4.0.3
+      - uses: pyiron/actions/add-to-python-path@actions-4.0.4
+        if: inputs.extra-python-paths != ''
+        with:
+          path-dirs: ${{ inputs.extra-python-paths }}
+      - uses: pyiron/actions/build-docs@actions-4.0.4
         with:
           python-version: ${{ inputs.python-version }}
           env-files: ${{ inputs.docs-env-files }}
@@ -244,7 +248,11 @@ jobs:
     runs-on: ${{ inputs.runner }}
     steps:
       - uses: actions/checkout@v4
-      - uses: pyiron/actions/build-notebooks@actions-4.0.3
+      - uses: pyiron/actions/add-to-python-path@actions-4.0.4
+        if: inputs.extra-python-paths != ''
+        with:
+          path-dirs: ${{ inputs.extra-python-paths }}
+      - uses: pyiron/actions/build-notebooks@actions-4.0.4
         with:
           python-version: ${{ inputs.python-version }}
           env-files: ${{ inputs.notebooks-env-files }}
@@ -281,11 +289,11 @@ jobs:
 
     steps:
     - uses: actions/checkout@v4
-    - uses: pyiron/actions/add-to-python-path@actions-4.0.3
+    - uses: pyiron/actions/add-to-python-path@actions-4.0.4
       if: inputs.extra-python-paths != ''
       with:
         path-dirs: ${{ inputs.extra-python-paths }}
-    - uses: pyiron/actions/unit-tests@actions-4.0.3
+    - uses: pyiron/actions/unit-tests@actions-4.0.4
       with:
         python-version: ${{ matrix.python-version }}
         env-files: ${{ inputs.tests-env-files }}
@@ -298,7 +306,7 @@ jobs:
   coverage:
     needs: commit-updated-env
     if: ${{ inputs.do-codecov || inputs.do-coveralls || inputs.do-codacy }}
-    uses: pyiron/actions/.github/workflows/tests-and-coverage.yml@actions-4.0.3
+    uses: pyiron/actions/.github/workflows/tests-and-coverage.yml@actions-4.0.4
     secrets: inherit
     with:
       tests-env-files: ${{ inputs.tests-env-files }}
@@ -318,7 +326,11 @@ jobs:
     runs-on: ${{ inputs.runner }}
     steps:
     - uses: actions/checkout@v4
-    - uses: pyiron/actions/unit-tests@actions-4.0.3
+    - uses: pyiron/actions/add-to-python-path@actions-4.0.4
+      if: inputs.extra-python-paths != ''
+      with:
+        path-dirs: ${{ inputs.extra-python-paths }}
+    - uses: pyiron/actions/unit-tests@actions-4.0.4
       with:
         python-version: ${{ inputs.python-version }}
         env-files: ${{ inputs.tests-env-files }}
@@ -333,11 +345,11 @@ jobs:
     runs-on: ${{ inputs.runner }}
     steps:
     - uses: actions/checkout@v4
-    - uses: pyiron/actions/add-to-python-path@actions-4.0.3
+    - uses: pyiron/actions/add-to-python-path@actions-4.0.4
       if: inputs.extra-python-paths != ''
       with:
         path-dirs: ${{ inputs.extra-python-paths }}
-    - uses: pyiron/actions/unit-tests@actions-4.0.3
+    - uses: pyiron/actions/unit-tests@actions-4.0.4
       with:
         python-version: ${{ inputs.alternate-tests-python-version }}
         env-files: ${{ inputs.alternate-tests-env-files }}
@@ -353,7 +365,7 @@ jobs:
     runs-on: ${{ inputs.runner }}
     steps:
       - uses: actions/checkout@v4
-      - uses: pyiron/actions/pip-check@actions-4.0.3
+      - uses: pyiron/actions/pip-check@actions-4.0.4
         with:
           python-version: ${{ inputs.python-version }}
 
@@ -363,6 +375,9 @@ jobs:
     runs-on: ${{ inputs.runner }}
     steps:
       - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ inputs.python-version }}
       - uses: psf/black@stable
         with:
           options: "--check --diff"
@@ -373,6 +388,9 @@ jobs:
     runs-on: ${{ inputs.runner }}
     steps:
       - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ inputs.python-version }}
       - uses: astral-sh/ruff-action@v1
         with:
           args: check
@@ -383,6 +401,9 @@ jobs:
     runs-on: ${{ inputs.runner }}
     steps:
       - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ inputs.python-version }}
       - uses: astral-sh/ruff-action@v1
         with:
           args: check --select I --fix --diff

.github/workflows/pyproject-release.yml

@@ -83,11 +83,11 @@ jobs:
     runs-on: ${{ inputs.runner }}
     steps:
     - uses: actions/checkout@v4
-    - uses: pyiron/actions/cached-miniforge@actions-4.0.3
+    - uses: pyiron/actions/cached-miniforge@actions-4.0.4
       with:
         python-version: ${{ inputs.python-version }}
         env-files: ${{ inputs.env-files }}
-    - uses: pyiron/actions/update-pyproject-dependencies@actions-4.0.3
+    - uses: pyiron/actions/update-pyproject-dependencies@actions-4.0.4
       with:
         input-toml: ${{ inputs.input-toml }}
         lower-bound-yaml: ${{ inputs.lower-bound-yaml }}

.github/workflows/tests-and-coverage.yml

@@ -69,11 +69,11 @@ jobs:
     runs-on: ${{ inputs.runner }}
     steps:
       - uses: actions/checkout@v4
-      - uses: pyiron/actions/add-to-python-path@actions-4.0.3
+      - uses: pyiron/actions/add-to-python-path@actions-4.0.4
         if: inputs.extra-python-paths != ''
         with:
           path-dirs: ${{ inputs.extra-python-paths }}
-      - uses: pyiron/actions/unit-tests@actions-4.0.3
+      - uses: pyiron/actions/unit-tests@actions-4.0.4
         with:
           python-version: ${{ inputs.python-version }}
           env-files: ${{ inputs.tests-env-files }}

README.md

@@ -119,7 +119,7 @@ on:
 
 jobs:
   pyiron:
-    uses: pyiron/actions/.github/workflows/push-pull.yml@actions-4.0.3
+    uses: pyiron/actions/.github/workflows/push-pull.yml@actions-4.0.4
     secrets: inherit
 ```
 

build-docs/action.yml

@@ -21,11 +21,11 @@ inputs:
 runs:
   using: 'composite'
   steps:
-  - uses: pyiron/actions/cached-miniforge@actions-4.0.3
+  - uses: pyiron/actions/cached-miniforge@actions-4.0.4
     with:
       python-version: ${{ inputs.python-version }}
       env-files: ${{ inputs.standard-docs-env-file }} ${{ inputs.env-files }}
-  - uses: pyiron/actions/pyiron-config@actions-4.0.3
+  - uses: pyiron/actions/pyiron-config@actions-4.0.4
   - name: Build sphinx documentation
     shell: bash -l {0}
     run: |

build-notebooks/action.yml

@@ -28,11 +28,11 @@ inputs:
 runs:
   using: 'composite'
   steps:
-  - uses: pyiron/actions/cached-miniforge@actions-4.0.3
+  - uses: pyiron/actions/cached-miniforge@actions-4.0.4
     with:
       python-version: ${{ inputs.python-version }}
       env-files: ${{ inputs.standard-notebooks-env-file }} ${{ inputs.env-files }}
-  - uses: pyiron/actions/pyiron-config@actions-4.0.3
+  - uses: pyiron/actions/pyiron-config@actions-4.0.4
   - name: Build notebooks
     shell: bash -l {0}
     run: $GITHUB_ACTION_PATH/../.support/build_notebooks.sh ${{ inputs.notebooks-dir }} ${{ inputs.exclusion-file }} ${{ inputs.kernel }}

cached-miniforge/action.yml

@@ -62,7 +62,7 @@ inputs:
 runs:
   using: "composite"
   steps:
-  - uses: pyiron/actions/write-environment@actions-4.0.3
+  - uses: pyiron/actions/write-environment@actions-4.0.4
     with:
       env-files: ${{ inputs.env-files }}
   - name: Calculate cache label info

pip-check/action.yml

@@ -13,7 +13,7 @@ inputs:
 runs:
   using: 'composite'
   steps:
-  - uses: pyiron/actions/cached-miniforge@actions-4.0.3
+  - uses: pyiron/actions/cached-miniforge@actions-4.0.4
     with:
       python-version: ${{ inputs.python-version }}
       env-files: ${{ inputs.env-files }}